DMCS 2021 Publications

Russell, J. L., Long, D. G,  Chang, P., Cowell, M., Curchister, E., Dinniman, M. S., Fellows, C., Goodman, P. J., Hofmann, E. E., Jelenak, Z., Klinck, J., Lovenduski, N., Lofverstrom, M., Mazloff, M., Petroy, S., Polit, A., Rodriguez, E., Schofield, O., Stouffer, R. J., Wanninkhof, R., Weimerr, C., Zeng, X. 2021. Measuring Winds from Space to Reduce the Uncertainty in the Southern Ocean Carbon Budget: An Observing System Design Experiment and Proposed Mission. Geophysical Research Letters doi: DOI: 10.1002/essoar.10506276.1

Guo, X. 2021. Genetics in shellfish culture. In: Molluscan Shellfish Aquaculture: A Practical Guide, S. Shumway (ed.), 5m Books Ltd, Essex, UK, 552p.

Chan, J., L. Wang, L. Li, K. Mu, D. Bushek, Y. Xu, X. Guo, G. Zhang and L. Zhang. 2021. Transcriptomic response to Perkinsus marinus in two Crassostrea oysters reveals evolutionary dynamics of host-parasite interactions. Frontiers in Genetics, 2494. DOI: 10.3389/fgene.2021.795706

Li, A., H. Dai, X. Guo, Z. Zhang, K. Zhang, C. Wang, X. Wang, W. Wang, H. Chen, X. Li, H. Zheng, L. Li & G. Zhang. 2021. Genome of the estuarine oyster provides insights into climate impact and adaptive plasticity. Communications Biology 4:1287. DOI: 10.1038/s42003-021-02823-6

Li, A., L. Li, Z. Zhang, S. Li, W. Wang, X. Guo & G. Zhang. 2021. Noncoding Variation and Transcriptional Plasticity Promote Thermal Adaptation in Oysters by Altering Energy Metabolism. Molecular Biology and Evolution 38:5144-5155. DOI: 10.1093/molbev/msab241

Cui, Z., L. Hu, C. Li, Z. Zhang, X. Guo, H. Wang. 2021. Identification of Saccostrea mordax and a new species Saccostrea mordoides sp. nov. (Bivalvia: Ostreidae) from China. J. of Shellfish Research, 40(1):63-75. DOI: 10.2983/035.040.0107

Modak, T.H., R. Literman, J.B. Puritz, K.M. Johnson, E.M. Roberts, D. Proestou, X. Guo, M. Gomez-Chiarri & R.S. Schwartz. 2021. Extensive genome-wide duplications in the eastern oyster (Crassostrea virginica). Philosophical Transactions of the Royal Society B: Biological Sciences 376:20200164. DOI: 10.1098/rstb.2020.0164

Peñaloza, C., A. P. Gutierrez, L. Eöry, S. Wang, X. Guo, A. L. Archibald, T. P. Bean & R. D. Houston. 2021. A chromosome-level genome assembly for the Pacific oyster Crassostrea gigas. GigaScience 10(3):giab020. DOI: 10.1093/gigascience/giab020

Bascur M, Morley SA, Meredith MP, Muñoz-Ramírez CP, Barnes DKA, Schloss IR, Sands CJ, Schofield O, Román-Gonzaléz A, Cárdenas L, Venables H, Brante A, Urzúa Á. 2021. Interpopulational differences in the nutritional condition of Aequiyoldia eightsii (Protobranchia: Nuculanidae) from the Western Antarctic Peninsula during austral summer. PeerJ 9:e12679 DOI: 10.7717/peerj.12679

Ben P. Diaz, Ben Knowles, Christopher T. Johns, Christien P. Laber, Karen Grace V. Bondoc, Liti Haramaty, Frank Natale, Elizabeth L. Harvey, Sasha J. Kramer, Luis M. Bolaños, Daniel P. Lowenstein, Helen F. Fredricks, Jason Graff, Toby K. Westberry, Kristina D. A. Mojica, Nils Haëntjens, Nicholas Baetge, Peter Gaube, Emmanuel Boss, Craig A. Carlson, Michael J. Behrenfeld, Benjamin A. S. Van Mooy & Kay D. Bidle. 2021. Seasonal mixed layer depth shapes phytoplankton physiology, viral production, and accumulation in the North Atlantic. Nature Communications. DOI: 10.1038/s41467-021-26836-1

Schofield, O. (Chair), Barger, A., Brunt, K., Clauer, R., Das, I., Detrich, W., Gooseff, M., Halanych, K., Halpern, M., Murray, A., Rignot, E., Shevenell, A., Takai, H., Wilson, T., Wolff, E.  National Academies of Sciences, Engineering, and Medicine 2021. Mid-Term Assessment of Progress on the 2015 Strategic Vision for Antarctic and Southern Ocean Research. Washington, DC: The National Academies Press. DOI: 10.17226/26338

Able, K. W. 2021.  From Cedar Cemeteries to Marsh Lakes: a Case Study of Sea-Level Rise and Habitat Change in a Northeastern US Salt Marsh. Estuaries & Coasts 44:1649–1657.

Paukert, C., Olden, J.D., Lynch, A.J., Breshears, D.D., Chambers, R.C., Chu, C., Daly, M., Dibble, K.L., Falke, J., Issak, D., Jacobson, P., Jensen, O., Munroe, D. 2021. Climate change effects on North American fish and fisheries to inform adaptation strategies. Fisheries, 46(9): 449-464. DOI: 10.1002/fsh.10668

Ashton-Alcox, K.A., Morson, J.M., Powell, E.N., Gius, J.E., Munroe, D.M., & Bushek, D. 2021. Oyster recruitment and persistence on planted versus native substrate over 13 years in the Delaware Bay oyster fishery resource. Journal of Shellfish Research 40(2): 191-211. DOI: 10.2983/035.040.0202

Nazzaro, L., Slesinger, E., Kohut, J., Saba, G.K., Saba, V.S. 2021. Sensitivity of marine fish thermal habitat models to fishery data sources. Ecology and Evolution, DOI: 10.1002/ece3.7817

Yajuan Lin, Carly Moreno, Adrian Marchetti, Hugh Ducklow, Oscar Schofield, Erwan Delage, Michael Meredith, Zuchuan Li, Damien Eveillard, Samuel Chaffron & Nicolas Cassar. 2021. Decline in plankton diversity and carbon flux with reduced sea ice extent along the Western Antarctic Peninsula. Nature Communications. DOI: 10.1038/s41467-021-25235-w

Shinn, J.P., Munroe, D.M., Rose, J. A 2021. Fish’s-Eye-View: Shellfish Farms as Marine Habitat In New Jersey. Aquaculture Environment Interactions. 13: 295-300 DOI: 10.3354/aei00407

Hyewon Heather Kim, Ya-Wei Luo, Hugh W. Ducklow, Oscar M. Schofield, Deborah K. Steinberg, and
Scott C. Doney. 2021. WAP-1D-VAR v1.0: development and evaluation of a one-dimensional variational data assimilation model for the marine ecosystem along the West Antarctic Peninsula. Geosci. Model Dev., 14, 4939–4975. DOI: 10.3354/aei00407

Zaibao Yang, Yanli Lei, Yair Rosenthal, Tiegang Li, Zhimin Jian. 2021. Late Pleistocene climate induced changes in paleo-vegetation in Borneo: Possible implications to human divergence. Quaternary Science Reviews. Vol 267. DOI: 10.1016/j.quascirev.2021.107109

Miles, T., Slade, W., Glenn, S. August 2021. Sediment Resuspension and Transport from a Glider-Integrated Laser in Situ Scattering and Transmissometry (LISST) Particle Analyzer. Journal of Atmospheric and Oceanic Technology. Volume 38. DOI: 10.1175/JTECH-D-20-0207.1

Hauzer, H., Evans, D., Müller, W., Rosenthal, Y., & Erez, J. (2021). Salinity effect on trace element incorporation in cultured shells of the large benthic foraminifer Operculina ammonoides. Paleoceanography and Paleoclimatology, 36, e2021PA004218. DOI: 10.1029/2021PA004218

Houedec, S. L., Erez, J., & Rosenthal, Y. (2021). Testing the influence of changing seawater Ca concentration on Elements/Ca ratios in planktic foraminifera: A culture experiment. Geochemistry, Geophysics, Geosystems, 22, e2020GC009496. DOI: 10.1029/2020GC009496

International Altimetry Team, J. Wilkin and 400 others, (2021), Altimetry for the future: Building on 25 years of progress, Advances in Space Research, DOI: 10.1016/j.asr.2021.01.022

Moore, A., J. Levin, H. Arango and J. Wilkin, (2021), Assessing the performance of an ocean observing, analysis and forecast System for the Mid-Atlantic Bight using array modes, Ocean Modelling, 164, 101821,  DOI: 10.1016/j.ocemod.2021.101821

Levin, J., H. Arango, B. Laughlin, E. Hunter, J. Wilkin and A. Moore, (2021), Observation Impacts on the Mid-Atlantic Bight Front and Cross-Shelf Transport in 4D-Var Ocean State Estimates, Part II – The Pioneer Array, Ocean Modelling, 157, 101731, DOI: 10.1016/j.ocemod.2020.101731

2021. Williams, T.J., E.E. Martin, E.L. Sikes, A. Starr, N.E. Umling, and R. Glaubkex, Neodymium isotope evidence for coupled Southern Ocean circulation and Antarctic climate throughout the last 118,000 years, invited paper, Quat. Sci. Rev., 260, Article 106915 DOI: 10.1016/j.quascirev.2021.106915

2021. Umling, N. E., B. Saad, E. Sikes, N. F. Goodkin,, Proximity to undersaturation and the influences on G. bulloides area-density in southern Indian Ocean marine sediments, Paleoceanography and Paleoclimatology, 36, e2021PA004249. DOI: 10.1029/2021PA004249

2021. Williams, T.J., A. J. Wagner, E.L. Sikes and E. E. Martin Evolution of the oceanic 13C Suess effect in the Southeastern Indian Ocean between 1994 and 2018, Geochemistry, Geophysics, Geosystems, 22, e2020GC009402. DOI: 10.1029/2020GC00940

Beaird, N., Glenn, S., Kohut, J., Miles,T. Saba, G., Schofield, O. 2021. RUCOOL Operational Oceanography Masters – workforce development case study. In The New Blue Economy. Spinrad and Hoatling (eds). Elsevier, Amsterdam pp 417-424

Martin, A.H., Pearson, H., Saba, G.K., Olsen, E.M. 2021. Integral functions of marine vertebrates in the ocean carbon cycle and climate change mitigation. One Earth 4(5): 680-693.

Le Hénaff, M., Domingues, R., Halliwell, G., Zhang, J. A., Kim, H.-S., Aristizabal, M., et al. (2021). The role of the Gulf of Mexico ocean conditions in the intensification of Hurricane Michael (2018). Journal of Geophysical Research: Oceans, 126, e2020JC016969

Murphy, S. C., L. J. Nazzaro, J. Simkins, M. J. Oliver, J. Kohut, M. Crowley, and T. N. Miles (2021), Remote Sensing of Environment Persistent upwelling in the Mid-Atlantic Bight detected using gap-filled , high-resolution satellite SST, Remote Sens. Environ., 262, 112487, doi:10.1016/j.rse.2021.112487

Kerkhof, L (2021)  Is Oxford Nanopore sequencing ready for analyzing complex microbiomes?  FEMS Microbiology Ecology, 97: fiab001

Meredith, M. P., Stammerjohn, S. E., Ducklow, H. W., Leng, M. J., Arrrowsmith, C., Brearley, A. J., Venabkes, H. J, Barnham, M., Melchiorr, Wessem, J., Schofield, O., Waite, N. 2021. Local- and large-scale drivers of variability in the coastal freshwater budget of the Western Antarctic Peninsula. Journal of Geophysical Research. DOI: 10.1029/2021JC017172

Lutz, Richard A. 2021. Shell Morphology and Morphometry of Larval and Post-Larvavl Donax Fossor Say (Bivalvia: Donacidae). Journal of Shellfish Research 40(1).

Saba GK, Bockus AB, Shaw CT, Seibel BA (2021) Combined effects of ocean acidification and elevated temperature on feeding, growth, and physiological processes of Antarctic krill Euphausia superba. Mar Ecol Prog Ser 665:1-18. DOI: 10.3354/meps13715

Brown, M. S., Bowman, J. S., Lin, Y., Cassar, N., Schofield, O. 2021. Low diversity of a key phytoplankton groups along the West Antarctic Peninsula. Limnology and Oceanography. DOI: 10.1002/lno.11765

Schultz, C., Doney, S. C., Hauck, J., Kavanaugh, M. T. Schofield, O. 2021. Modeling phytoplankton blooms and inorganic carbon responses to sea-ice variability in the West Antarctic Peninsula (WAP). Journal of Geophysical Research. Geosciences. DOI: 10.1002/essoar.10505538.1

Nardelli, S., Cimino, M., Conroy, J. A.,  Fraser, W., Steinberg, D., Schofield, O. 2021. Krill availability in Adelie and Gentoo foraging regions south of Anvers Island, Antarctica. Limnology Oceanography DOI: 10.1002/lno.11750

Chang, J.H., Hart, D. R., Munroe, D. M., & Curchitser, E. N. (2021).
Bias correction of ocean bottom temperature and salinity simulations
from a regional circulation model using regression kriging. Journal of
Geophysical Research: Oceans, 126, e2020JC017140.

Miller, J.R., J. E. Fuller, M. J. Puma, J. M. Finnegan, 2021. Elevation-dependent warming in the Eastern Siberian Arctic, Environ. Res. Lett. 16, 024044.

Chana F. Kranzler, Mark A. Brzezinski, Natalie R. Cohen, Robert H. Lampe,
Michael Maniscalco, Claire P. Till, James Mack, Jason R. Latham, Kenneth W. Bruland, Benjamin S. Twining, Adrian Marchetti and Kimberlee Thamatrakoln. Impaired viral infection and reduced mortality of diatoms in iron-limited oceanic regions. Nat. Geosci. (2021). DOI: 10.1038/s41561-021-00711-6

Eleanor A. Bochenek, Eric N. Powell. Time of day affects squid catch in the U.S. Illex illecebrosus squid fishery. Regional Studies in Marine Science 44 (2021).

Kennish, M. J. 2021. Drivers of Change in Estuarine and Coastal Marine Environments: An Overview. Open Journal of Ecology, 11: 224-239. DOI: 10.4236/oje.2021.113017

Safiq, A., C.M. Free, J. Caracappa, J.L. Valenti, and O. Jensen. (2021). Perceptions of ecosystem-based fisheries management among state natural resource agency scientists in the Northeastern United States. Fisheries 46(2): 66-75. DOI: 10.1002/fsh.10527

Ryan H. Glaubke, Kaustubh Thirumalai, Matthew W. Schmidt, Jennifer E. Hertzberg. February 2021. Discerning Changes in High‐Frequency Climate Variability Using Geochemical Populations of Individual Foraminifera. Paleoceanography and Paleoclimatology. DOI: 10.1029/2020PA004065

Mummadisetti MP, Drake JL, Falkowski PG. 2021 The spatial network of skeletal proteins in a stony coral. J. R. Soc. Interface 18: 20200859. DOI: 10.1098/rsif.2020.0859

Bailey, K., Sipps, K., Saba, G.K., Arbuckle-Keil, G., Chant, R.J., Fahrenfeld, N.L. 2021. Quantification and composition of microplastics in the Raritan Hudson Estuary: Comparison to pathways of entry and implications for fate. Chemosphere 272: 129886, DOI: 10.1016/j.chemosphere.2021.129886.

Borsetti, S., P. R. Hollyman, & D. M. Munroe. (2021). Using a sclerochronological approach to determine a climate-growth relationship for waved whelk, Buccinum undatum, in the U.S. Mid-Atlantic. Estuarine, Coastal and Shelf Science: 107255. Advance online publication. DOI: 10.1016/j.ecss.2021.107255

Grace K. Saba, Adrian B. Burd, John P. Dunne, Santiago Hernández‐León, Angela H. Martin, Kenneth A. Rose, Joseph Salisbury, Deborah K. Steinberg, Clive N. Trueman, Rod W. Wilson, Stephanie E. Wilson. (Feb 2021). Toward a better understanding of fish‐based contribution to ocean carbon flux. Limnology and Oceanography. DOI: 10.1002/lno.11709

Optis, M., Kumler, A., Brodie, J., Miles, T. (Feb 2021). Quantifying sensitivity in numerical weather prediction‐modeled offshore wind speeds through an ensemble modeling approach. Wind Energy. DOI: 10.1002/we.2611

Gutt, J., Isla, E., Xavier, J., Adams, B., Ahn, I., Cheng, C., Colesie, C., Cummings, V., Prisco, G., Griffiths, H., Hawes, I., Hogg, I., McIntyre, T., Meiners, K., Pearce, D., Peck, L., Piepenburg, D., Reisinger, R., Saba, G., Schloss, I., Signori, C., Smith, C., Vacchi, M., Verde, C., Wall, D., (Dec 2020). Antarctic ecosystems in transition – life between stresses and opportunities. Biological Reviews, Cambridge Philosophical Society. DOI: 10.1111/brv.12679

Farhat, S., A. Tanguy, E. Pales Espinosa, X. Guo, I. Boutet, R. Smolowitz, D. Murphy, G. J. Rivara & B. Allam. 2020. Identification of variants associated with hard clam, Mercenaria mercenaria, resistance to Quahog Parasite Unknown disease. Genomics 112:4887-4896. DOI: 10.1016/j.ygeno.2020.08.036

Song, H., X. Guo, L. Sun, Q. Wang, F. Han, H. Wang, G. A. Wray, P. Davidson, Q. Wang, Z. Hu, C. Zhou, Z. Yu, M. Yang, J. Feng, P. Shi, Y. Zhou, L. Zhang & T. Zhang. 2021. The hard clam genome reveals massive expansion and diversification of inhibitors of apoptosis in Bivalvia. BMC Biology 19:15.

Pelusi, A., P. De Luca, F. Manfellotto, K. Thamatrakoln, K.D. Bidle, M. Montresor. 2021. Virus-induced spore formation as a defense mechanism in marine diatoms. New Phytologist 229:2251–2259; DOI: 10.1111/nph.16951

Bova, S., Rosenthal, Y., Liu, Z. et al. Seasonal origin of the thermal maxima at the Holocene and the last interglacial. Nature 589, 548–553 (2021). DOI:10.1038/s41586-020-03155-x

Slesinger, E., Jensen, O. P., and Saba, G. Spawning phenology of a rapidly shifting marine fish species throughout its range. – ICES Journal of Marine Science, (2021) DOI:10.1093/icesjms/fsaa252

Acquafredda, M., Guo, X, Munroe, D. 2021. Exploring the Feasibility of Selectively Breeding Farmed Atlantic Surfclams Spisula solidissima for Greater Heat Tolerance. North American Journal of Aquaculture, 83: 3-14. DOI: 10.1002/naaq.10168

Mann, R., Powell, E.N., Munroe, D. 2020. The Case of the “Missing” Arctic Bivalves and the Walrus, the Biggest [Overlooked] Clam Fishery on the Planet. Journal of Shellfish Research. 39(3): 501-509. DOI: 10.2983/035.039.0301