Publications 2014

Crum, K. P., Fuchs, H. L., Bologna, P. A., Gaynor, J. J. 2014. Model-to-data comparisons reveal influence of jellyfish interactions on plankton community dynamics . Marine Ecology Progress Series. 517: 105-119. doi: 10.3354/meps11022

Kennish, M. J., M. S. Meixler, G. Petruzzelli, and B. Fertig. 2014. Tuckerton Peninsula salt marsh system: a sentinel site for assessing climate change effects. Bulletin of the New Jersey Academy of Science, 59(2): 1-5.

Wang, X., Q. Li, J. Lian, L. Li, L. Jin, H. Cai, F. Xu, H. Qi, L. Zhang, F. Wu, J. Meng, H. Que, X. Fang, X. Guo and G. Zhang. 2014. Genome-wide and single-base resolution DNA methylomes of the Pacific oyster Crassostrea gigas provide insight into the evolution of invertebrate CpG methylation. BMC Genomics, 15(1):1119. http://www.biomedcentral.com/1471-2164/15/1119/

Zhang, N., F. Xu & X. Guo. 2014. Genomic analysis of the Pacific oyster (Crassostrea gigas) reveals possible conservation of vertebrate sex determination in a Mollusc. G3: Genes| Genomes| Genetics, 4:2207-2217. doi:10.1534/g3.114.013904

Fellous, A., P. Favrel, X. Guo and G. Riviere. 2014. The Jumonji gene family in Crassostrea gigas suggests evolutionary conservation of Jmj-C histone demethylases orthologues in the oyster gametogenesis and development. Gene 538: 164-175.

Zhang, L., L. Li, Y. Zhu, G. Zhang and X. Guo. 2014. Transcriptome analysis reveals a rich gene set related to innate immunity in the eastern oyster (Crassostrea virginica). Marine Biotechnology, 16:17-33.

Yang, H., Y. Wang, X. Guo and T.R. Tiersch. 2014. Production of inbred larvae through self-fertilization using oocytes and cryopreserved sperm from the same individuals after sex reversal in eastern oyster Crassostrea virginica. Aquaculture Research, doi:10.1111/are.12371.

Able, K. W., and F. J. Fodrie. 2015 Distribution and dynamics of habitat use by juvenile and adult flatfishes. Pp. 242-282 In: R. N. Gibson, R. D. M. Nash, A. J. Geffen, and H. W. Van der Veer (Eds.), Flatfishes: Biology and Exploitation (2nd edition), John Wiley and Sons Ltd., West Sussex, UK.

K.P. Crum, H.L. Fuchs, P.A.X. Bologna, and J.J. Gaynor. 2014. Model-to-data comparisons reveal influence of jellyfish interactions on plankton community dynamics. Marine Ecology Progress Series 517: 105-119.

Levitan, O., Dinamarca, J., Zelzion, E., Lun, D. S., Guerra, T. L., Kim K. M., Kim J., Van Mooy B. A. S., Bhattacharya, D., Falkowski, P. G. 2014. Remodeling of intermediate metabolism in the diatom Phaeodactylum tricornutum under nitrogen stress. Proceedings of the National Academies. www.pnas.org/cgi/doi/10.1073/pnas.1419818112

Kustka, A. B., Milligan, A. J., Zheng, H., New, A. N., Gates, C., Bidle, K. D., Reinfelder, J. R. 2014. Low CO2 results in a rearrangement of carbon metabolism to support C4 photosynthetic carbon assimilation in Thalassiosira pseudonana . New Phytoplogist. 204: 507-520. doi: 10.1111/nph.12926

Schieler, B. M., Hale, E. A., Targett, T. E. 2014. Daily variation in ingress of fall-spawned larval fishes into Delaware Bay in relation to alongshore and along-estuary wind components . Estuarine, Coastal and Shelf Science. 151: 141-147. http://dx.doi.org/10.1016/j.ecss.2014.10.004

Ghatak, D., E. Sinsky, and J. Miller, 2014. Role of snow-albedo feedback in higher elevation warming over the Himalayas, Tibetan Plateau and Central Asia. Environmental Research Letters 9, doi:10.1088/1748-9326/9/11/114008. http://iopscience.iop.org/1748-9326/9/11/114008/article

Chen,Y. C.M. Naud, I. Rangwala, C.C. Landry, and J.R. Miller, 2014. Comparison of the sensitivity of surface downward longwave radiation to changes in water vapor at two high elevation sites. Environmental Research Letters 9, doi:10.1088/1748-9326/9/11/114015 http://iopscience.iop.org/1748-9326/9/11/114015/pdf/1748-9326_9_11_114015.pdf

Vetriani, C., Voordeckers, J. W., Crespo-Medina, M., O’Brien, C., Giovannelli, D. and Lutz, R. A. 2014. Deep-sea hydrothermal vent Epsiloproteobacteria encode for a conserved and widespread nitrate reduction pathway (Nap). ISME J. 8:1510-1521. doi:10.1038/ismej.2013.246.

Pérez-Rodríguez, I., Bolognini, M., Ricci, J., Bini, E. and Vetriani, C. From deep-sea volcanoes to human pathogens: A conserved quorum sensing signal in Epsilonproteobacteria. ISME J.,doi:10.1038/ismej.2014.214.

Munroe, D. M., Klinck, J. M., Hofmann, E. E., Powell, E. N. 2014. A modelling study of the role of marine protected areas in metapopulation genetic connectivity in Delaware Bay oysters . Aquatic Conservation: Marine and Freshwater Ecosystems. 24: 645-666. DOI: 10.1002/aqc.2400

Van De Plassche, O., Wright, A. J., Horton, B. J., Engelharrt, S. E., Kemp, A. C., Mallinson, D., Kopp, R. E. 2014. Estimating tectonic uplift of the Cape Fear Arch (south-eastern United States) using reconstructions of Holocene relative sea level . Journal of Quanternary Science 29(8): 749-759. DOI: 10.1002/jqs.2746

Woodward, S. C., Rosenthal, Y., Miller, K. G., Wright, J. D., Chiu, B. K., Lawrence, K. T. 2014. Antarctic role in Northern Hemisphere glaciation . Sciencexpress.doi.org/10.1126/science.1255586

Xu, G., Jackson, D. R., Bemis, K. G., Rona, P. A. 2014. Time-series measurement of hydrothermal heat flux at the Grotto mound, Endeavour Segment, Juan de Fuca Ridge. Earth and Planetary Science Letters. 404: 220-231. doi.org./10.1016/j.epsl.2014.07.040

Pasotti, F., Manini, E., Giovannelli, D., Wolfl, A., Monien, D., Verleyen, E., Braeckman, U., Abele, D., Vanreusel, A. 2014. Antarctic shallow water benthos in an area of recent rapid glacier retreat . Marine Ecology. doi: 10.1111/maec.12179

Narvaez, D. A., Munroe, D. M., Hofmann, E. E., Klinck, J. M., Powell, E. N., Mann, R., Curchitser, E. 2014. Long-term dynamics in Atlantic surfclam (Spisula solidissima) populations: The role of bottom water temperature . Journal of Marine Systems. doi.org/10.1016/j.jmarsys.2014.08.007

Able, K. W., Lopez-Duarte, P. C., Fodrie, J. F., Jensen, O. P., Martin, C. W., Roberts, B. J., Valenti, J., O’Conner, K., Halbert, S. C. 2014. Fish assemblages in Louisiana salt marshes: Effects of the Macondo oil spill. Estuaries and Coasts DOI 10.1007/s12237-014-9890-6

Schofield, O., Kohut, J., Saba, G., Yi, X., Wilkin, J., Glenn, S. 2014. Oceans: Observation and Prediction. In Encyclopedia of Natural Resources: Water. Taylor and Francis: NY, p. 802-807. doi/book/10.1081/E-ENRW

Pilarczyk, J. E., Dura, T., Horton, B., Engelha, S. E. 2014. Microfossils from coastal enironments as indicators of paleo-earthquakes, tsunamis and stotrms . Palaeography, Paleoclimatology, Paleoecology. http://dx.doi.org/10.1016/j.palaeo.2014.06.033

Bricelji, M. V., Cembella A. D., Laby, D. 2014. Temperature effects on kinetics of paralytic shellfish toxin elmination in Atlantic surfclams, Spisula solidissma. Deep-Sea Research Reearch II. http://dx.doi.org/10.1016/j.dsr2.2013.05.014

Fodrie, J. F., Able, K. W., Galvez, F., Heck, K. L., Jensen, P. P., Lopez-Duarte, P. C., Martin, C. W., Turner, E. R., Whitehead, A. 2014. 2014. Intregrating organismal and population responses of esturarine fishes in Macondo spill research . BioScience. 64(9):778-788. doi:10.1093/biosci/biu123

Rolton, A., Vignier, J., Soudant, P., Shumway, S. E., Bricelji, M. V., Volety, A. 2014. Effects of the red tide dinoflaggelate, Crassostrea virginica and norther quahog Mercenaria mercenaria . Aquatic toxicology. 155: 196-206. http://dx.doi.org/10.1016/j.aquatox.2014.06.023

Mass, T., Drake, J. L., Peters, E. C., Jiang, W., Falkowski, P. G. 2014. Immunolocalization of skeletal matrix proteins in tissue and mineral of the coral Stylophora pistillata . Proceedings of the National Academies of Science. www.pnas.org/cgi/doi/10.1073/pnas.1408621111

Constable, A., Costa, D., Murphy, E., Hofmann, E., Schofield, O., Press, A., Johnson, N. M., Newman, L. 2014. Assessing status and change in Southern ecosystems. In De Broyer C., Koubbi P., Griffiths, H. J., Raymond, B., Udekem d’Acoz C. d’ (eds). Biogeographic Atlas of the Southern Ocean. Scientific Committee on Antarctic Research, Cambridge, pp. 404-407.

Foflonker, F., Price, D. C., Qiu, H., Palenik, B., Wang, S., Bhattacharya, D. 2014. Genome of the halotolerant green alga Picochlorum sp. reveals strategies for thriving under fluctuating environmental conditions. Environmental Microbiology. doi:10.1111/1462-2920.12541

Cheng, S., Price, D. C., Karkar, S., Bhattacharya, D. 2014. Exploring biotic interactions within protist cell populations using network methods. Eukaryotic Microbiobiology. DOI: 10.1111/jeu.12113

Babila, T., Rosenthal, Y., Conte, M. H. 2014. Evaluation of the biogeochemical controls on B/Ca of Globigerinoides ruber white from the Oceanic Flux Program, Bermuda. Earth and Planetary Science Letters 404: 67-76. http://dx.doi.org/10.1016/j.epsl.2014.05.053

Liu, Z., Zhu, J., Rosenthal, Y., Zhang, X., Otto-Bliesner, B. L., Timmermann, A., Smith, R S., Lohmann, G., Zheng, W., Timm, O. E. 2014. The holocene temperature conundrum . Proceedings of the National Academy of Sciences. www.pnas.org/cgi/doi/10.1073/pnas.1407229111

Tuorto, S., Taghon, G. L. 2014. Rates of benthic bacterivory of marine ciliates as a function of prey concentration. Journal of Experimental Marine Biology. 460: 129–134. http://dx.doi.org/10.1016/j.jembe.2014.06.014

Free C. M., Landis R. M. , Grogan J., Schulze M. D., Lentini M., Dünisch O. 2014.Management implications of long-term tree growth & mortality rates: a modeling study of big-leaf mahogany (Swietenia macrophylla) in the Brazilian Amazon . Forest Ecology & Management330: 46–54.

Hinckley, E.S., R.T Barnes, S.P. Anderson, M.W.Williams, and S.M. Bernasconi 2014. Nitrogen retention and transport differ by hillslope aspect at the rain-snow transition of the Colorado Front Range. Journal of Geophysical Research- Biogeosciences. DOI: 10.1002/2013JG00258

Dubois, N., Oppo, D. W., Galy, V. V., Mohtadl, M., van der Kaars, S., Tiernery, J. E., Rosenthal, Y., Eglinton, T. I., Luckge, A., Linsley, B. K. 2014. Indonesian vegetation response to changes in rainfall seasonality over the past 25,000 years. Nature Geoscience. doi: 10.1038/NGEO2182

Saba, G. K., Fraser, W. R., Saba, V. S., Iannuzzi, R. A., Coleman, K. A., Doney, S. C., Ducklow, H., Martinson, D. G., Miles, T. N., Patterson-Fraser, D. L., Stammerjohn, S. E., Steinbergy, D. K., Schofield, O. 2014. Winter and spring controls on the summer food web of the coastal West Antarctic Peninsula . Nature Communications 5:4318 doi: 10.1038/ncomms5318

Lathrop, R. G., Jr., S. M. Haag, D. Merchant, M. J. Kennish, and B. Fertig. 2014. Comparison of remotely-sensed surveys vs. in situ plot-based assessments of sea grass condition in Barnegat Bay-Little Egg Harbor, New Jersey USA. Journal of Coastal Conservation. 18: 299-308 doi:10.1007/s11852-014-0319-y.

Kopp, R. E., Horton, R. M., Little, C. M., Mitrovica, J. X., Oppenheimer, M., Rasmussen, D. J., Strauss, B. H., Tebaldi, C. 2014. Probabilistic 21st and 22nd century sea-level projections at a global network of tide gauge sites. Earth’s Future. doi:10.1002/2014EF000239

Free, C. M., Jensen, O. P., Mason, S. A., Eriksen, M., Williamson, N. J., Boldgiv, B. 2014. High-levels of microplastic pollution in a large, remote, mountain lake . Marine Pollution Bulletin dx.doi.org/10.1016/j.marpolbul.2014.06.001

Sipler, R. E., McGuinness, L. R., Kirkpatrick, G. J., Kerkhof, L. J., Schofield, O. M. 2014. Bacteriocidal effects of brevetoxin on natural microbial communities . Harmful Algae. http://dx.doi.org/10.1016/j.hal.2014.04.009

Lathrop, R. Auermuller, L., Trimble, J., Bognar, J. 2014. The application of WebGIS tools for visualizing coastal flooding vulnerability and planning for resiliency: The New Jersey experience . ISPRS International Journal of Geo-Information. 3: 408-429; doi:10.3390/ijgi3020408

Colombo, M. J., Ha, J., Reinfelder, J. R., Barkay, T., Yee, N. 2014. Oxidation of Hg(0) to Hg(II) by diverse anaerobc bacteria . Chemical Geology. 363: 334-340. http://dx.doi.org/10.1016/j.chemgeo.2013.11.020

Able, K. W., Grothues, T. M., Rackovan, J. L., Buderman, F. E. 2014. Application of mobile dual-frequency identification sonar (DIDSON) to fish in estuarine habitats . Northwestern naturalist. 21(2): 192-209.

Hilborn, R. D. J. Hively, O.P. Jensen, and T. A. Branch. 2014. The dynamics of fish populations at low abundance and prospects for rebuilding and recovery. ICES Journal of Marine Science. doi:10.1093/icesjms/fsu035

Foley, P. and B. McCay. 2014. Certifying the commons: eco-certification, privatization, and collective action. Ecology and Society 19 (2): 28. [online] URL: http://www.ecologyandsociety.org/vol19/iss2/art28/

Micheli, F., Giulio De Leo, Sheste, G., Martone R. G., Lluch-Cota S., Butner C., Crowder, L. B., Fujita R., Gelcich S., Jain M., Lester S. E., McCay B., Pelc R., Sáenz-Arroyo A. 2014. A system-wide approach to supporting improvement in seafood production practices and outcomes. Frontiers in Ecology and the Environment 2014; doi:10.1890/110257.

Harel, A., Bromberg, Y., Falkowski, P. G., Bhattacharya, D. 2014. Evolutionary history of redox metal-binding domains across the tree of life . Proceedings of the National Academy of Sciences. www.pnas.org/cgi/doi/10.1073/pnas.1403676111

Lathrop, R., Auermuller, L., Trimble, J., Bignar, J. 2014. The application of WebGIS tools for visualizing coastal flooding vulnerability and planning for resiliency: The New Jersey experience . ISPRS International Journal of Geo-Informatics. doi:10.3390/ijgi3020408

Pilarczyk, J. E., Goff, J., Mountjoy, J., Lamarche, G., Pelletier, B., Horton, B. P. 2014. Sediment transport trends from a tropical Pacific lagoon as indicated by Homotrema rubra taphonomy: Wallis Island, Polynesia. Marine Micropaloentology 109: 21-29. http://dx.doi.org/10.1016/j.marmicro.2014.03.004

Brown, A. L., Reinhardt, E. G., van Hengstum, P. J., Pilarczyk, J. E. 2014. A coastal Yucatan sinkhole records intense hurricane events. Journal of Coastal Research. 30(2): 418-428. doi: 10.2112/JCOASTRES-D-13-00069.1

Horton, B. P., Rahmstorf, S., Engelhart, S. E., Kemp, A. C. 2014. Expert assessment of sea-level rise by AD 2100 and AD 2300 . Quaternary Science Reviews. http://dx.doi.org/10.1016/j.quascirev.2013.11.002

Nikitina, D. L., Kemp, A., Horton, B. P., Vane, C. H. 2014. Storm erosion during the past 2000 years along the north shore of Delaware Bay, USA . Geomorpology. http://dx.doi.org/10.1016/j.geomorph.2013.11.022

Jones, K. M. M. M., McGrath, P. E., Able, K. W. 2014. White perch Morone americana (Gmelin, 1789) habitat choice and movements: Comparisons between Phragmites-invaded and Spartina reference marsh creeks based on acoustic telemetry . Journal of Experimental Marine Biology. 455 (2014) 14–21. http://dx.doi.org/10.1016/j.jembe.2014.02.011

Aslan, C., M., Pinsky, M. L., Ryan, M., Souther, S., Terrell, K. 2014. Cultivating creativity in conservation science.Conservation Biology 28(2): 345-353 doi:10.1111/cobi.12173

Kennish, M. J., M. J. Brush, and K. A. Moore (eds.). 2014. Drivers of Change in Shallow Coastal Photic Systems. Estuaries and Coasts, Volume 37, Supplement 1, 242 pp. ISSN 1559-2723.

Kennish, M. J., M. J. Brush, and K. A. Moore. 2014. Drivers of change in shallow coastal photic systems: an introduction to a special issue. Estuaries and Coasts 37, (Suppl. 1): S3-S19. doi:10.1007/s1223701497794

Fertig, B., M. J. Kennish, G. P. Sakowicz, and L. K. Reynolds. 2014. Mind the data gap: identifying and assessing drivers of changing eutrophication condition. Estuaries and Coasts 37, (Suppl. 1): S198-221. doi:10.1007/s1223701397465

Smith, M. A., Walker, N. J., Free, C. M., Kirchhoff, M. J., Drew, G. S., Warnock, N., Stenhouse, I. J. 2014. Identifying marine Important bird areas using at-sea survey data . Biological Conservation 172: 180-189. http://dx.doi.org/10.1016/j.biocon.2014.02.039

Kennish, M. J., Spahn, A., Sakowicz, G. P. 2014. Sentinel site development of a major salt marsh system in the Mid-Atlantic region (USA). Open Journal of Ecology. 44: 77-86. http://dx.doi.org/10.4236/oje.2014.43010

Seyler, L. M., McGuinness, L. M., Kerkhof, L. J. 2014. Crenarchaeal heterotrophy in salt marsh sediments . ISME J. doi:10.1038/ismej.2014.15

Galaasen, E. V., Ninnemann, U. S., Irvali, N., Kleiven, H. F., Rosenthal, Y., Kissel, C., Hodell, D. A. 2014. Rapid reductions in North Atlantic deep water during the peak of the late interglacial period . Science. 10.1126/science.1248667 Science News/Views synposis

Andrianasolo, E. H., Haramaty, L., White, E., Lutz, R., Falkowski, P. G. 2014. Mode of action of diterpene and characterization of related metabolites from the soft coral, Xenia elongata . Marine Drugs.12, 1102-1115; doi:10.3390/md12021102

Grogan, J., Landis, M. R., Free, C. M., Schulze, M. D., Lentini, M., Ashton, M. S. 2014. Big-leaf mahogany Swietenia macrophylla population dynamics and implications for sustainable management. Journal of Applied Ecology 51: 664-674. doi:10.1111/1365-2664.12210. June 2014 Editor’s Choice .

de Bruyn, M., M. L. Pinsky, B. Hall, P. Koch, C. Baroni, and A. R. Hoelzel. 2014.Rapid increase in southern elephant seal genetic variation after a founder event. Proceedings of the Royal Society B: Biological Sciences 281: 20133078 doi: 10.1098/rspb.2013.3078

Pinsky, M. L. and S. R. Palumbi (2014) Meta-analysis reveals lower genetic diversity in overfished populations. Molecular Ecology 23: 29-39 doi: 10.1111/mec.12509 Cover article. News & Views perspective by Allendorf et al.

Nelson, E., P. Kareiva, M. Ruckelshaus, K. Arkema, G. Geller, E. Girvetz, D. Goodrich, V. Matzek, M. Pinsky, W. Reid, M. Saunders, D. Semmens, and H. Tallis. 2013. Climate change’s impact on key ecosystem services and the human well-being they support in the United States. Frontiers in Ecology and Evolution 11(9): 483-493 doi: 10.1890/120312

Jurisa, Joseph T., Robert J. Chant, 2013: Impact of Offshore Winds on a Buoyant River Plume System. J. Phys. Oceanogr., 43, 2571–2587. doi:http://journals.ametsoc.org/doi/full/10.1175/JPO-D-12-0118.1

Hay, C., Mitrovica, J. X., Gomez, N., Creveling, J. R., Austermann, J., Kopp, R. E. 2014. The sea-level fingerprints of ice-sheet collapse during interglacial periods . Quaternary Science Reviews. 87: 60-69. dx.doi.org/10.1016/j.quascirev.2013.12.022

Rose, S.L., J. Fulton, C.M. Brown, F. Natale, B.A.S. Van Mooy, and K.D. Bidle. 2014. Isolation and characterization of lipid rafts in Emiliania huxleyi: a role for membrane microdomains in host-virus Interactions. Environ. Microbiol.(doi:10.1111/1462-2920.12357)

Fulton, J.M, H.F. Fredricks, K.D. Bidle, A. Vardi, B.J. Kendrick, G.R. DiTullio and B.A.S. Van Mooy. 2014 Novel molecular determinants of viral susceptibility and resistance in the lipidome of Emiliania huxleyi. Environ. Microbiol. (doi:10.1111/1462-2920.12358).