Publications 2022

Hudson, K., Oliver, M., Kohut, J., Dinniman, M., Klinck, J., Cimino, M., Bernard., K., Statscewich, H., Fraser., W, 2022. A subsurface eddy associated with a submarine canyon increases availability and delivery of simulated Antarctic krill to penguin foraging regions. Marine Ecology Progress Series, Vol 702:105-122. DOI  10.3354/meps14211

Hudson, K., Oliver, M., Kohut, J., Cohen, J., Dinniman, M., Klinck, J., Reiss, C., Cutter, G., Statscewich, H., Bernard, K., 2022. Subsurface Eddy Facilitates Retention of Simulated Diel Vertical Migrators in a Biological Hotspot. JGR Oceans, Vol. 127, Issue 5.  DOI: 10.1029/2021JC017482

Boutet, I., H. J. Alves Monteiro, L. Baudry, T. Takeuchi, E. Bonnivard, B. Billoud, S. Farhat, R. Gonzales-Haraya, B. Salaun, A. C. Andersen, J.-Y. Toullec, F. H. Lallier, J.-F. Flot, N. Guiglielmoni, X. Guo, C. Li, B. Allam, E. Pales-Espinoza, J. Hemmer-Hansen, P. Moreau, M. Marbouty, R. Koszul & A. Tanguy. 2022. Chromosomal assembly of the flat oyster (Ostrea edulis L.) genome as a new genetic resource for aquaculture. Evolutionary Applications, 15:1730-1748. DOI: 10.1111/eva.13462

Li, C., H. Wang and X. Guo. 2022. Regulation of the cell cycle, apoptosis, and proline accumulation plays an important role in the stress response of the Eastern oyster Crassostrea virginica. Frontiers in Marine Science, 9:921877. DOI: 10.3389/fmars.2022.921877

Zeng, D., Guo, X. 2022. Mantle transcriptome provides insights into biomineralization and growth regulation in the eastern oyster (Crassostrea virginica). Marine Biotechnology, 24:82-96. DOI: 10.1007/s10126-021-10088-7

Yao, S., L. Li, X. Guan, Y. He, A. Jouaux, F. Xu, X. Guo, G. Zhang & L. Zhang. 2022. Pooled resequencing of larvae and adults reveals genomic variations associated with Ostreid herpesvirus 1 resistance in the Pacific oyster Crassostrea gigas. Frontiers in Immunology, 13:928628. DOI: 10.3389/fimmu.2022.928628

Guzik, M., Saba, G.K., Wright-Fairbanks, E.K. 2022. Observing winter carbonate chemistry dynamics throughout the Mid-Atlantic Bight shelf using novel glider technology. Aresty Rutgers Undergraduate Research Journal 1(4): DOI: 10.14713/arestyrurj.v1i4.203

Wilkin, J., J. Levin, A. Moore, H. Arango, A. López and E. Hunter, (2022), A data-assimilative model reanalysis of the U.S. Mid Atlantic Bight and Gulf of Maine: Configuration and comparison to observations and global ocean models, Progress in Oceanography, 209, 102919, DOI: 10.1016/j.pocean.2022.102919

Levin, J., S. Grodsky, D. Vandemark and J. Wilkin, (2022), Haline control of unusually deep winter mixing in the Gulf of Maine investigated using a regional data-assimilative model, Journal of Geophysical Research Oceans, 127, e2021JC018281, DOI: 10.1029/2021JC018281

Morson, J., Borsetti, S., Hennen, D. 2023. Sampling High Biomass but Rare Benthic Animals: Methods for Surveying Commercial Clam Stocks Using a Hydraulic Dredge. Fisheries Research, 258: 106538 DOI: 10.1016/j.fishres.2022.106538

Locke, H., Bidle, K. D., Thamatrakoln, K., Johns, C. T., Bonacela, J. A., Ferrell, B. S., Womack, E. K. 2022. Marine viruses and climate change: Virioplankton, the carbon cycle, and our future ocean. In Advances in Virus Research: Viruses and Climate Change. Roossinck, M. J. (Ed) Elsevier, Cambridge

Smedile, F., Foustoukos, D., Patwardhan., S., Mullane, K., Schlegel, I., Adams, M.W., Gerrit, J.S., Giovannelli, D. and Vetriani, C. (2022). Adaptations to high pressure of Nautilia sp. strain PV-1, a piezophilic Campylobacterium (aka Epsilonproteobacterium) isolated from a deep-sea hydrothermal vent. Environ. Microbiol. Published online. DOI: 10.1111/1462-2920.16256

Sciutteri, V., Smedile, F., Vizzini, S., Mazzola, A. and Vetriani, C. (2022). Microbial biofilms along a geochemical gradient at the shallow-water hydrothermal system of Vulcano island, Mediterranean Sea. Front Microbiol. 13:840205. doi: 10.3389/fmicb.2022.840205

McGuinness, K.N., Klau, G.W., Morrison, S.M. et al. Evaluating Mineral Lattices as Evolutionary Proxies for Metalloprotein Evolution. Orig Life Evol Biosph (2022). DOI: 10.1007/s11084-022-09630-x

Falkowski, P. The Gaia Letters. Science, 378 (6621). DOI: 10.1126/science.ade8916

Wright-Fairbanks, E.K., Saba, G.K. 2022. Quantification of the Dominant Drivers of Acidification in the Coastal Mid-Atlantic Bight. Journal of Geophysical Research: Oceans 127(11): e2022JC018833,  DOI: 10.1029/2022JC018833.

Nardelli, S., Gray, P., Schofield, O. 2022. Developing a convolutional neural network to classify phytoplankton images collected with an Imaging FlowCytobot along the West Antarctic Peninsula. Marine Technology Society Journal 56:45-57. DOI: 10.4031/MTSJ.56.5.8

Munroe, D., Powell, E.N., Klinck, J.M., Scheld, A., Borsetti, S., Beckensteiner, J., Hofmann, E.E. 2022. The Atlantic surfclam fishery and offshore wind energy development: 1. Model development and verification. ICES Journal of Marine Science, 79(6): 1787–1800. DOI: 10.1093/icesjms/fsac108

Scheld, A., Beckensteiner, J., Munroe, D., Powell, E.N., Borsetti, S., Hofmann, E.E., Klinck, J.M. 2022. The Atlantic surfclam fishery and offshore wind energy development: Assessing economic impacts. ICES Journal of Marine Science, 79(6): 1801–1814. DOI: 10.1093/icesjms/fsac109 

Joseph M Finnegan and James R Miller 2022 Environ. Res. Lett. 17 114002. DOI: 10.1088/1748-9326/ac97f8

Jian, Z., Wang, Y., Dang, H., Mohtadi, M., Rosenthal, Y., Lea, D., Liu, Z., Jin, H., Ye, L., Kuhnt, W., Wang, X. Warm pool ocean heat content regulates ocean–continent moisture transport. Nature (2022). DOI: 10.1038/s41586-022-05302-y

Kennish, M. J. 2022.  Management Strategies to Mitigate Anthropogenic Impacts in Estuarine and Coastal Marine Environments:  A Review.  Open Journal of Ecology, 12(10): 667-688.  DOI: 10.4236/oje.2022.1210038

Jackson, R.H., R. Motyka, J. Amundson, N. Abib, D. Sutherland, J. Nash, C. Kienholz (2022): “The relationship between submarine melt and subglacial discharge from observations at a tidewater glacier.” Journal of Geophysical Research: Oceans, 127, DOI: 10.1029/2021JC018204

Hager, A., D. Sutherland, J. Amundson, R.H. Jackson, R. Motyka, J. Nash (2022): “Subglacial discharge reflux and buoyancy forcing drive seasonality in a silled glacial fjord.” Journal of Geophysical Research: Oceans, 127, DOI: 10.1029/2021JC018355

Hunter, E. J., Fuchs, H. L., Wilkin, J. L., Gerbi, G. P., Chant, R. J., and Garwood, J. C.: ROMSPath v1.0: offline particle tracking for the Regional Ocean Modeling System (ROMS), Geosci. Model Dev., 15, 4297–4311, DOI: 10.5194/gmd-15-4297-2022, 2022

Zavala-Garay, J., Rogowski, P., Wilkin, J., Terrill, E., Shearman, R. K., & Tran, L. H. (2022). An integral view of the Gulf of Tonkin seasonal dynamics. Journal of Geophysical Research: Oceans, 127, e2021JC018125. DOI: 10.1029/2021JC018125

Révelard A, Tintoré J, Verron J, Bahurel P, Barth JA, Belbéoch M, Benveniste J, Bonnefond P, Chassignet EP, Cravatte S, Davidson F, deYoung B, Heupel M, Heslop E, Hörstmann C, Karstensen J, Le Traon PY, Marques M, McLean C, Medina R, Paluszkiewicz T, Pascual A, Pearlman J, Petihakis G, Pinardi N, Pouliquen S, Rayner R, Shepherd I, Sprintall J, Tanhua T, Testor P, Seppälä J, Siddorn J, Thomsen S, Valdés L, Visbeck M, Waite AM, Werner F, Wilkin J and Williams B, (2022) Ocean Integration: The Needs and Challenges of Effective Coordination Within the Ocean Observing System. Frontiers in Marine Science, 8:737671. DOI: 10.3389/fmars.2021.737671

Valenti, J.L., Grothues, T.M. & Able, K.W. Subtidal Fish Habitat in a Temperate Lagoonal Estuary: Comparison of Salt Marsh Creeks, Sand, and Seagrass. Estuaries and Coasts (2022). DOI: 10.1007/s12237-022-01119-0

Li, C., Clementi, V. J., Bova, S. C., Rosenthal, Y., Childress, L. B., Wright, J. D., et al. (2022). The sediment green-blue color ratio as a proxy for biogenic silica productivity along the Chilean Margin. Geochemistry, Geophysics, Geosystems, 23, e2022GC010350. DOI: 10.1029/2022GC010350

Weiss, T. L., Linsley, B. K., Gordon, A. L., Rosenthal, Y., & Dannenmann-Di Palma, S. (2022). Constraints on marine isotope stage 3 and 5 sea level from the flooding history of the Karimata Strait in Indonesia. Paleoceanography and Paleoclimatology, 37, e2021PA004361. DOI: 10.1029/2021PA004361

Rosenthal, Y., Bova, S., & Zhou, X. (2022). A user guide for choosing planktic foraminiferal Mg/Ca-temperature calibrations. Paleoceanography and Paleoclimatology, 37, e2022PA004413. DOI: 10.1029/2022PA004413

Peter D. Clift, Christian Betzler, Steven C. Clemens, Beth Christensen, Gregor P. Eberli, Christian France-Lanord, Stephen Gallagher, Ann Holbourn, Wolfgang Kuhnt, Richard W. Murray, Yair Rosenthal, Ryuji Tada, and Shiming Wan. A synthesis of monsoon exploration in the Asian marginal seas.Sci. Dril., 10, 1–29, 2022. DOI: 10.5194/sd-10-1-2022

Bova, S., Rosenthal, Y., Liu, Z. et al. Reply to: Non-trivial role of internal climate feedback on interglacial temperature evolution. Nature 600, E4–E6 (2021). DOI: 10.1038/s41586-021-03931-3

Hak Soo Lim, Dongha Kim, Hee Jun Lee, Minwoo Kim, Seung Hwan Jin, Travis N. Miles, Scott Glenn; Typhoon-induced Full Vertical Mixing and Subsequent Intrusion of Yangtze Fresh Waters in the Southern Yellow Sea: Observation with an Underwater Glider and GOCI Ocean Color Imagery. Journal of Coastal Research 1 September 2021; 114 (SI): 171–175. doi: DOI: 10.2112/JCR-SI114-035.1

Miles, T.; Zhang, D.; Foltz, G.; Zhang, J.; Meinig, C.; Bringas, F.; Triñanes, J.; Le Hénaff, M.; Aristizabal Vargas, M.; Coakley, S.; et al. Uncrewed Ocean Gliders and Saildrones Support Hurricane Forecasting and Research. Oceanog 2021, 34, 78–81, DOI: 10.5670/oceanog.2021.supplement.02-28

S. Bova, T. Laepple, J.Shakun, F.He, S.Marcott.. Concerns of assuming linearity in the reconstruction of thermal maxima. Nature 607, E12–E14 (2022). DOI: 10.1038/s41586-022-04831-w

Isabel Horna-Gray, Nora A. Lopez, Youngbeom Ahn, Brandon Saks, Nathaniel Girer, Ute Hentschel, Peter J. McCarthy, Lee J. Kerkhof, Max M. Häggblom. Desulfoluna spp. form a cosmopolitan group of anaerobic dehalogenating bacteria widely distributed in marine sponges. FEMS Microbiology Ecology, 2022, 98, 1–9. DOI: 10.1093/femsec/fiac063

Jihua Hao, Winnie Liu, Jennifer L. Goff, Jeffrey A. Steadman, Ross R., Paul G. Falkowski1, Nathan Yee. 2022. Anoxic photochemical weathering of pyrite on Archean continents. Science Advances. eabn2226. DOI: 10.1126/sciadv.abn2226

Michael L Bender, Xin-Guang Zhu, Paul Falkowski, Fangfang Ma, Kevin Griffin, On the rate of phytoplankton respiration in the light, Plant Physiology, 2022;, kiac254, DOI: 10.1093/plphys/kiac254

Borsetti, S., Wiedenmann, J., Munroe, D. 2022. Evaluation of natural mortality of an unfished gastropod (Buccinum undatum) population using statolith age-frequency data in the southern Mid-Atlantic Bight. Aquaculture, Fish and Fisheries. 2(3): 243-251. https://doi.org/10.1002/aff2.47

Acquafredda, M.P., Morris, N., Ragone Calvo, L., De Luca, M., Munroe, D. 2022. Evaluating the efficacy of nursery gear types for cultivating Atlantic surfclams (Spisula solidissima).  Aquaculture Reports, 25: 101186. DOI: 10.1016/j.aqrep.2022.101186

Pousse, E., Munroe, D., Hart, D., Hennen, D., Cameron, L., Rheuban, J., Wang, Z.A., Wikfors, G., Meseck, S. 2022. Dynamic Energy Budget modeling of Atlantic surfclam, Spisula solidissima, under future ocean acidification and warming. Marine Environmental Research, 177: 105602. DOI: 10.1016/j.marenvres.2022.105602

Lowell W. Fritz, Lisa M. Calvo, Lisa Wargo and Richard A. Lutz. 2022. Seasonal Changes in Shell Microstructure of some Common Bivalve Molluscs in the Mid-Atlantic Region. Journal of Shellfish Research, Vol. 41, No. 1, 1–59, 2022. DOI: 10.2983/035.041.0101

Mathieu Gentil, Claude Estournel, Xavier Durrieu de Madron, Gaël Many, Travis Miles, Patrick Marsaleix, Serge Berné, François Bourrin, Sediment dynamics on the outer-shelf of the Gulf of Lions during a storm: An approach based on acoustic glider and numerical modeling, Continental Shelf Research,
2022. DOI: 10.1016/j.csr.2022.104721.

Cheong, K.Y., Jouhet, J., Maréchal, E. et al. The redox state of the plastoquinone (PQ) pool is connected to thylakoid lipid saturation in a marine diatom. Photosynth Res (2022). DOI: 10.1007/s11120-022-00914-x

Agarwal, A., Di, R. & Falkowski, P.G. Light-harvesting complex gene regulation by a MYB-family transcription factor in the marine diatom, Phaeodactylum tricornutum. Photosynth Res (2022). DOI: 10.1007/s11120-022-00915-w

Schwartzman, B., Saba, G.K. 2021. Workshop Summary: Developing a Statewide Ocean Acidification Monitoring Network for New Jersey. November 19, 2021 (virtual). Access report here.

Gutt, J., Isla, E., Xavier, J., Adams, B., Ahn, I.-Y., Cheng, C.-H., Colesi, C., Cummings, V., Griffiths, H., Hogg, I., McIntyre, T., Meiners, K., Pearse, D., Peck, L., Piepenburg, D., Reisinger, R., Saba, G.K., Schloss, I., Signori, C., Smith, C.R., Vacchi, M., Verde, C., Wall, D. 2022. Ten scientific messages on risks and opportunities for life in the Antarctic. Antarctic Environments Portal.

Michael R. Stukel, Oscar M.E. Schofield, Hugh W. Ducklow, Seasonal variability in carbon:234 thorium ratios of suspended and sinking particles in coastal Antarctic waters: Field data and modeling synthesis, Deep Sea Research Part I: Oceanographic Research Papers, Volume 184, 2022. DOI: 10.1016/j.dsr.2022.103764

Schofield, O., A. Fassbender, M. Hood, K. Hill, and K. Johnson (2022), A global ocean biogeochemical observatory becomes a reality, Eos, 103, DOI: 10.1029/2022EO220149

Slesinger, E., Bates, K., Wuenschel, M., Saba, G. 2022. Regional differences in energy allocation of black sea bass (Centropristis striata) along the US Northeast Shelf (36°N – 42°N) and throughout the spawning season. Journal of Fish Biology, DOI: 10.1111/jfb.15023

Garwood, J.C., Fuchs, H.L., Gerbi, G.P., Hunter, E.J., Chant, R.J. and Wilkin, J.L. (2022). Estuarine retention of larvae: Contrasting effects of behavioral responses to turbulence and waves. Limnol Oceanogr. DOI: 10.1002/lno.12052

Elko, N., Foster, D., Kleinheinz, G., Raubenheimer, B., Brander, S., Kinzelman, J., Kritzer, J.P., Munroe, D., Storlazzi, C., Sutula, M., Mercer, A., Coffin, S., Fraioli, C., Ginger, L., Morrison, E., Parent-Doliner, G., Akan, C., Canestrelli, A., DiBenedetto, M., Lang, J., and Simm, J., 2021. “Human and Ecosystem Health in Coastal Systems”, Shore & Beach, 90(1), pg 64-91. DOI: 10.34237/1009018

Kerkhof LJ, Roth PA, Deshpande SV, Bernhards RC, Liem AT, Hill JM, Häggblom MM, Webster NS, Ibironke O, Mirzoyan S, Polashock JJ, and RF Sullivan (2022) A ribosomal operon database and MegaBLAST settings for strain-level resolution of microbiomes FEMS Microbes, DOI: 10.1093/femsmc/xtac002

Friedland, K. D., Miles, T., Goode, A.G., Powell, E. N., & Brady, D. C. (2022). The Middle AtlanticBight Cold Pool is warming and shrinking: Indices from in situautumn seafloor temperatures.Fisheries Oceanography,31(2),217–223. DOI: 10.1111/fog.12573

Wang, J., Fu, L., Haines, B., Lankhorst, M., Archers, M., Aragon, D., Bigorre, S., Chao, Y., Farrar, T., Kerfoot, J., Lucas, A., Meinig, C., Ray, R., Sandwell, D., Send, U., Sevadijan, J., Schofield, O., Stalin, S. 2022. On the development of SWOT in situ Calibration/Validation of the short-wavelength ocean topography. Journal of Atmospheric and Oceanic technology. https://doi.org/10.1175/JTECH-D-21-0039.1

Sipps, K., Arbuckle-Keil, G., Fahrenfeld, N., Walsh, K., Garzio, L., Chant, R., Saba, G. 2022. Pervasive occurrence of microplastics in Hudson-Raritan estuary zooplankton. Science of the Total Environment 817: 152812, DOI: 10.1016/j.scitotenv.2021.152812.

Yana Bromberg, Ariel A. Aptekmann, Yannick Mahlich, Linda Cook, Stefan Senn, Maximillian Miller, Vikas Nanda, Diego U. Ferreiro, Paul G. Falkowski. 2022. Quantifying structural relationships of metal-bindingsites suggests origins of biological electron transfer. Science Advances 8. DOI: 10.1126/sciadv.abj3984

Miles, T.N., D. Zhang, G.R. Foltz, J. Zhang, C. Meinig, F. Bringas, J. Triñanes, M. Le Hénaff, M.F. Aristizabal Vargas, S. Coakley, C.R. Edwards, D. Gong, R.E. Todd, M.J. Oliver, W.D. Wilson, K. Whilden, B. Kirkpatrick, P. Chardon-Maldonado, J.M. Morell, D. Hernandez, G. Kuska, C.D. Stienbarger, K. Bailey, C. Zhang, S.M. Glenn, and G.J. Goni. 2021. Uncrewed ocean gliders and saildrones support hurricane forecasting and research. Pp. 78–81 in Frontiers in Ocean Observing: Documenting Ecosystems, Understanding Environmental Changes, Forecasting Hazards. E.S. Kappel, S.K. Juniper, S. Seeyave, E. Smith, and M. Visbeck, eds, A Supplement to Oceanography 34(4), DOI: 10.5670/oceanog.2021.supplement.02-28

Sherman J, Subramaniam A, Gorbunov MY, Fernández-Carrera A, Kiko R, Brandt P and Falkowski PG (2022) The Photophysiological Response of Nitrogen-Limited Phytoplankton to Episodic Nitrogen Supply Associated With Tropical Instability Waves in the Equatorial Atlantic. Front. Mar. Sci. 8:814663. DOI: 10.3389/fmars.2021.814663

Miles, T.N., D. Zhang, G.R. Foltz, J. Zhang, C. Meinig, F. Bringas, J. Triñanes, M. Le Hénaff, M.F. Aristizabal Vargas, S. Coakley, C.R. Edwards, D. Gong, R.E. Todd, M.J. Oliver, W.D. Wilson, K. Whilden, B. Kirkpatrick, P. Chardon-Maldonado, J.M. Morell, D. Hernandez, G. Kuska, C.D. Stienbarger, K. Bailey, C. Zhang, S.M. Glenn, and G.J. Goni. 2021. Uncrewed ocean gliders and saildrones support hurricane forecasting and research. Pp. 78–81 in Frontiers in Ocean Observing: Documenting Ecosystems, Understanding Environmental Changes, Forecasting Hazards. E.S. Kappel, S.K. Juniper, S. Seeyave, E. Smith, and M. Visbeck, eds, A Supplement to Oceanography 34(4) DOI: 10.5670/oceanog.2021.supplement.02-28

Kim, H., Bowman, J. S., Luo, Y., Ducklow, H. W., Schofield, O. M., Steinberg, D. K., Doney, S. C. 2022. Modelling polar marine ecosystem functions guided by bacterial physiological and taxonomic traits. Biogeosciences. DOI: 10.5194/bg-19-117-2022

Maxim Y. Gorbunov and Paul G. Falkowski. Using Chlorophyll Fluorescence to Determine the Fate of Photons Absorbed by Phytoplankton in the World’s Oceans. Annual Review of Marine Science 2022 14:1, 213-238. DOI: 10.1146/annurev-marine-032621-122346