DMCS Publications 2017

 

Free, C.M., Grogan, J., Schulze, M.D., Landis, R.M., Brienen, R.J.W., Current Brazilian forest management guidelines are unsustainable for Swietenia, Cedrela, Amburana, and Copaifera: A response to da Cunha and colleagues, Forest Ecology and Management, Volume 386, 15 February 2017, Pages 81-83, ISSN 0378-1127, http://dx.doi.org/10.1016/j.foreco.2016.09.031.

DMCS Publications 2016

 

Bidegain, G., Powell, E.N., Klinck, J.M., Hofmann, E.E., Ben-Horin, T., Bushek, D., Ford, S.E., Munroe, D.M., Guo, X., Modeling the transmission of Perkinsus marinus in the Eastern oyster Crassostrea virginica, Fisheries Research, Volume 186, Part 1, February 2017, Pages 82-93, ISSN 0165-7836, http://dx.doi.org/10.1016/j.fishres.2016.08.006.

Luckenbach, M.W., Kraeuter, J.N., Bushek, D., Effects of Clam Aquaculture on Nektonic and Benthic Assemblages in Two Shallow-Water, Estuaries Journal of Shellfish Research, 35(4):757-775. 2016 doi: http://dx.doi.org/10.2983/035.035.0405

Munroe, D. 2016. Habitat effects on early post-settlement growth of intertidal clams, Venerupis philippinarum (A. Adams & Reeve, 1850). Journal of Molluscan Studies, 82(4): 507-514. doi: 10.1093/mollus/eyw014

Kennish, M. J., R. G. Lathrop, Jr., A. Spahn, G. P. Sakowicz, and R. Sacatelli. 2016. The JCNERR sentinel site: research and monitoring applications. Bulletin of the New Jersey Academy of Science, 61:1-8.

Shapiro, J., Dixon, L. K., Schofield, O., Kirkpatrick, B. A., Kirkpatrick, G. J. 2016. Sensors for ocean observing: The optical phytoplankton discriminator. In Coastal Ocean Observing Systems. Liu, Y., Kerkring, H., Weisberg, R. H. (editors) Elsevier Amsterdam 326-347

Li, Z., Cassar, N., Huang, K., Schofield, O., Ducklow, H. 2016. Interannual variability in net community production at the Western Antarctic Peninsula region (1997-2014). Journal of Geophysical Research DOI:10.1002/2015JC011378

Schofield, O., Newman, L., Bricher, P., Constable, A., Swart, S., Wahlin, A. 2016. Towards implementation of a Southern Ocean Observing System. Marine Technology Society 50(3): 63-68.

Carvalho, F., Kohut, J., Oliver, M. J., Sherrell, R. M., Schofield, O. 2016. Mixing and phytoplankton dynamics in a submarine canyon in the West Antarctic Peninsula. Journal of Geophysical Research DOI: 10.1002/2016JC011650

Obryk, M.K., Doran, P.T., Friedlaender, A.S., Gooseff, M.N., Li, W., Morgan-Kiss, R.M., Priscu, J.C., Schofield, O., Stammerjohn, S.E., Steinberg, D.K., Ducklow, H.W., Responses of Antarctic Marine and Freshwater Ecosystems to Changing Ice Conditions BioScience (October 01, 2016) 66 (10): 864-879 doi:10.1093/biosci/biw109

Powell, E. N., J. M. Klinck, E. E. Hofmann, P. Moreno,Kuykendall, KM, D. M. Munroe, and R. Mann. 2016. Captains' response to a declining stock as anticipated in the surfclam (Spisula solidissima) fishery on the U.S. Mid-Atlantic coast by model evaluation. Ocean and Coastal Management, 134:52-68. http://dx.doi.org/10.1016/j.ocecoaman.2016.09.012

López-Duarte PC, Fodrie FJ, Jensen OP, Whitehead A, Galvez F, Dubansky B, Able KW. (2016) Is Exposure to Macondo Oil Reflected in the Otolith Chemistry of Marsh-Resident Fish? PLoS ONE 11(9): e0162699. doi:10.1371/journal.pone.0162699

Grothues, T.M., Newhall, A.E., Lynch, J.F., Vogel, K.S., Gawarkiewicz, G.G., High-frequency side-scan sonar fish reconnaissance by autonomous underwater vehicles Canadian Journal of Fisheries and Aquatic Sciences, Published on the web 26 July 2016, 10.1139/cjfas-2015-0301 

Allen, K.A., Hönisch, B., Eggins, S.M., Haynes, L.L., Rosenthal, Y., Yu, J. Trace element proxies for surface ocean conditions: A synthesis of culture calibrations with planktic foraminifera, Geochimica et Cosmochimica Acta, Volume 193, 15 November 2016, Pages 197-221, ISSN 0016-7037, http://dx.doi.org/10.1016/j.gca.2016.08.015. 

Irval, N.,Ninnemann, U.S., Kleiven, H.F., Galaasen, E.V., Morley, A., Rosenthal, Y. Evidence for regional cooling, frontal advances, and East Greenland Ice Sheet changes during the demise of the last interglacial, Quaternary Science Reviews, Volume 150, 15 October 2016, Pages 184-199, ISSN 0277-3791, http://dx.doi.org/10.1016/j.quascirev.2016.08.029

Bidegan, G., E.N. Powell, J.M. Klinck, E.E. Hofmann, T. Ben-Horin, D. Bushek, S.E. Ford, D.M. Munroe, X. Guo, 2017. Modeling the transmission of Perkinsus marinus in the Eastern oyster Crassostrea virginica, Fisheries Research, 186: 82-93 dio:10.1016/j.fishres.2016.08.006

Pons, M., Branch, T. A., Melnychuk, M. C., Jensen, O. P., Brodziak, J., Fromentin, J. M., Harley, S. J., Haynie, A. C., Kell, L. T., Maunder, M. N., Parma, A. M., Restrepo, V. R., Sharma, R., Ahrens, R. and Hilborn, R. (2016), Effects of biological, economic and management factors on tuna and billfish stock status. Fish Fish. doi:10.1111/faf.12163

Lenker, M.A., Weidel, B.C., Jensen, O.P., Solomon, C.T., Developing Recreational Harvest Regulations for an Unexploited Lake Trout Population North American Journal Of Fisheries Management Vol. 36 , Iss. 2,2016

Hartman, K. J. and Jensen, O. P. (2016), Anticipating climate change impacts on Mongolian salmonids: bioenergetics models for lenok and Baikal grayling. Ecol Freshw Fish. doi:10.1111/eff.12282

Foss-Grant, A.P., Zipkin, E.F., Thorson, J.T., Jensen, O.P., Fagan, W.F., Hierarchical analysis of taxonomic variation in intraspecific competition across fish species, Ecology, 97(7), 2016, 1724-1734 doi: 10.1890/15-0733.1

Grothues, T.M., Rackovan, J.L., Able, K.W., Modification of nektonic fish distribution by piers and pile fields in an urban estuary, Journal of Experimental Marine Biology and Ecology, Volume 485, December 2016, Pages 47-56, ISSN 0022-0981, http://dx.doi.org/10.1016/j.jembe.2016.08.004.

Rashid, K. H., O. P. Jensen, and K. Able. 2016. Histological and hormonal changes towards the spawning season of female killifish Fundulus heteroclitus from the Great Bay in New Jersey, U.S.A. International Journal of PharmTech Research 9(7): 250-256.

Seroka, G., Miles, T., Xu, Y., Kohut, J., Schofield, O., Glenn, S., 2016: Hurricane Irene Sensitivity to Stratified Coastal Ocean Cooling. Mon. Wea. Rev., 144, 3507–3530, doi: 10.1175/MWR-D-15-0452.1.

G. Bidegain, E.N. Powell, J.M. Klinck, E.E. Hofmann, T. Ben-Horin, D. Bushek, S.E. Ford, D.M. Munroe, X. Guo, Modeling the transmission of Perkinsus marinus in the Eastern oyster Crassostrea virginica, Fisheries Research, Volume 186, Part 1, February 2017, Pages 82-93, ISSN 0165-7836, http://dx.doi.org/10.1016/j.fishres.2016.08.006.

Feehan, C. J., Brown, M. S., Sharp, W. C., Lauzon-Guay, J.-S. and Adams, D. K. (2016), Fertilization limitation of Diadema antillarum on coral reefs in the Florida Keys. Ecology, 97: 1897–1904. doi:10.1002/ecy.1461 

Bushek, D. and S.E. Ford. 2016. Anthropogenic impacts on an oyster metapopulation: Pathogen introduction, climate change and responses to natural selection. Elem Sci Anth 4: 000119. doi: 10.12952/journal.elementa.000119 

Dura T, Engelhart SE, Vacchi M, Horton BP, Kopp RE, Peltier WR, Bradley S. The role of holocene relative sea-level change in preserving records of subduction zone earthquakes. Current Climate Change Reports. 2016 Sep 1;2(3):86-100.  

Newhall, A.E., Lin, Y.T., Grothues, T.M., Lynch, J.F., Gawarkiewicz, G.G., A Method of Observing Acoustic Scattering and Absorption By Fish Schools Using Autonomous Underwater Vehicles. 2016 IEEE Journal of Oceanic Engineering vol.PP, no.99, pp.1-8 doi: 10.1109/JOE.2016.2552878

Goodwin, J.D., North, E.W., Kennedy, V.S., Identification of Eastern Oyster Crassostrea virginica Larvae Using Polarized Light Microscopy in a Mesohaline Region of Chesapeake Bay. Journal of Shellfish Research, 35(1):157-168 DOI: http://dx.doi.org/10.2983/035.035.0117 

Goodwin, J.D., North, E.W., Mitchell, I.D., Thompson, C.M., McFadden, H.R., Improving a semi-automated classification technique for bivalve larvae: Automated image acquisition and measures of quality control. 2016 Association for the Sciences of Limnology and Oceanography doi: 10.1002/lom3.10123 

Taghon, G.L., Ramey, P.A., Fuller, C.M., Petrecca, R.F., Grassle, J.P., Benthic Community Structure and Sediment Properties in Barnegat Bay, New Jersey, Before and After Hurricane Sandy. Coastal and Estuarine Research Federation 2016 DOI 10.1007/s12237-016-0133-x 

Shaw, T., Kirby, J.R., Holgate, S., Tutman, P., Plater, A.J., Contemporary Salt-Marsh Foraminiferal Distribution from the Adriatic Coast of Croatia and its Potential for Sea-Level Studies. The Journal of Foraminiferal Research Jul 2016, 46 (3) 314-332; DOI: 10.2113/gsjfr.46.3.314 

Patwardhan, S. and Vetriani, C. (2016). Varunaivibrio sulfuroxidans gen. nov., sp. nov., a facultatively chemolithoautotrophic, mesophilic alphaproteobacterium from a shallow-water gas vent at Tor Caldara, Tyrrhenian Sea.Intl. J. Syst. Evol. Microbiol., in press. doi:10.1099/ijsem.0.001235. 

Mazzini, P. L. F., and R. J. Chant (2016), Two-dimensional circulation and mixing in the far field of a surface-advected river plume, J. Geophys. Res. Oceans, 121, doi:10.1002/2015JC011059. 

Carnegie RB, Arzul I, Bushek D. 2016 Managing marine mollusc diseases in the context of regional and international commerce: policy issues and emerging concerns. 2016. Phil. Trans. R. Soc. B 371: 20150215. http://dx.doi.org/10.1098/rsb.2015.0215

Ben-Horin T, Lafferty KD, Bidegain G, Lenihan HS. 2016 Fishing diseased abalone to promote yield and conservation. Phil. Trans. R. Soc. B 371: 20150211. http://dx.doi.org/10.1098/rstb.2015.0211

Guo, X. and S. E. Ford. Infectious diseases and host responses in marine molluscs. 2016. Phil. Trans. R. Soc. B. 371: 20150206. http://dx.doi.org/10.1098/rstb.2015.0206

McGurk, E. S., S. Ford and D. Bushek. 2016. Unusually abundant and large ciliate xenomas in oysters, Crassostrea virginica, from Great Bay, New Hampshire, USA. J. Invert. Pathol. 137:23-32. http://dx.doi.org/10.1016/j.jip.2016.04.001

Ren, J., Z. Hou, H. Wang, M. Sun, X. Liu, B. Liu and X. Guo. 2016. Intraspecific variation in mitogenomes of five Crassostrea species provides insight into oyster diversification and speciation. Marine Biotechnology, 18(2):242-254. http://dx.doi.org/10.1007/s10126-016-9686-8

Sawai, Y., Horton, B.P., Kemp, A.C., Hawkes, A.D., Nagumo, T., and Nelson, A., 2016. Relations among diatoms and tidal environments in Oregon and Washington, USA. Diatom Research, 31, 17-38.

Milker, Y., Nelson, A.R., Horton, B.P., Engelhart, S.E., Bradley, L-A., and Witter, R.C., 2016. Differences in coastal subsidence in southern Oregon (USA) during at least six megathrust earthquake. Quaternary Science Reviews, 142, 143-163.

Hong, I., Dura, T., Ely, L.L., Horton, B.P., Nelson, A.R., Cisternas, M. and Wesson, R.L., 2016. A 600-year-long stratigraphic record of high tsunamis in south-central Chile. Holocene. 1-13

Hawkes, A.D., Kemp, A.C., Donnelly, J.P., Horton, B.P., Peltier, W.R., Cahill, N., Hill, D.F., Ashe, E. and Alexander, C.R., 2016. Relative sea-level change in northeastern Florida (USA) during the last ~8.0 ka. Quaternary Science Reviews, 142, 90-101.

Düsterhus, A., Rovere, A., Carlson, A.E., Horton, B.P., Klemann, V., Tarasov, L., Barlow, N.L.M., Bradwell, T., Clark, J., Dutton, A., Gehrels, W.R., Hibbert, F.D., Hijma, M.P., Khan, N., Kopp, R.E., Sivan, D. and Törnqvist, T.E., 2016. Palaeo sea-level and ice-sheet databases: problems, strategies and perspectives. Climate of the Past, 12, 911-921.

Jelen BI, Giovannelli D and Falkowski PG. 2016 The Role of Microbial Electron Transfer in the Coevolution of the Biosphere and Geosphere. Annual Review Microbiology, 70: 45-62

Giovannelli D, d'Errico G, Fiorentino F, Fattorini D, Regoli F, Angeletti L, Bakran-Petricioli T, Vetriani C and Yucel M, Taviani M and Manini E. 2016. Diversity and distribution of prokaryotes within a shallow-water pockmark field. Frontiers in Microbiology, 7:941

Grunert, P., Harzhauser, M., Rosenthal, Y., Carnevale, G., Estuarine Lago Mare fauna from the Tertiary Piedmont Basin indicates episodic Atlantic/Mediterranean exchange during the final stage of the Mediterranean Salinity Crisis, Palaeogeography, Palaeoclimatology, Palaeoecology, Volume 457, 1 September 2016, Pages 70-79, ISSN 0031-0182, http://dx.doi.org/10.1016/j.palaeo.2016.06.005.

Newmann, L., Schofield, O., Wahlin, A., Constaple, A., Swart, S., Williams, M., Mazloff, M., Firing, Y., Bricher, P. 2016. Understanding the Southern Ocean through sustained observations. Bulletin of the Australian Meteorological and Oceanographic Society. 28: 170-174.

Constaple, A. J., Costa, D. P., Schofield, O., Newman, L., Urban, E. R., Fulton, B., Melbourne-Thomas, J., Ballerini, T., Boyd, P. W., Brandt, A., de la Mare, B., Edwards, M., Eleaume, M., Emmerson, L., Fennel, K., Fielding, S., griiths, H., Gutt, J., Hindell, M. A., Hofmann, E. E., Jennings, S., Jensen, O., Kohut, J., La, H., Manderson, J., McCurdy, A., Mitchell, G., Moltmann, T., Muelbert, M., Murphy, E., Press, T., Raymond, B., Reid, K., Reiss, C., Rice, J., Salter, I., Smith, D., Song, S., Southwell, C., Swadling, K., Van de Putte, A., Willis, Z. Determining essential variables (ecosystem Essential Ocean Variables – eEOVs) for observing dynamics and change in marine ecosystems using the Southern Ocean as a case study. Journal of Marine System, doi: 10.1016/j.jmarsys.2016.05.003

Shapiro, J., Dixon, L. K., Schofield, O., Kirkpatrick, B. A., Kirkpatrick, G. J. 2016. Sensors for ocean observing: The optical phytoplankton discriminator. In Coastal Ocean Observing Systems. Liu, Y., Kerkring, H., Weisberg, R. H. (editors) Elsevier Amsterdam 326-347.

Nikrad, M.P., Kerkhof, L.J., Häggblom, M.M., The subzero microbiome: microbial activity in frozen and thawing soils FEMS Microbiol Ecol (2016) 92 (6): fiw081 DOI: http://dx.doi.org/10.1093/femsec/fiw081

Donato Giovannelli, Matthew Chung, Justin Staley, Valentin Starovoytov, Nadine Le Bris, Costantino Vetriani. 2016. Sulfurovum riftiae sp. nov., a mesophilic, thiosulfate-oxidizing, nitrate-reducing chemolithoautotrophic Epsilonproteobacterium isolated from the tube of the deep-sea hydrothermal vent polychaete, Riftia pachyptila. International Journal of Systematic and Evolutionary Microbiology. Published Ahead of Print: 26 April, 2016 doi: 10.1099/ijsem.0.001106

Pilarczyk, J.E., Horton, B.P., Soria J.A., Switzer, A.D., Siringan, F., Fritz, H.M., Khan, N.S., Ildefonso, S., Doctor, A.A., Garcia, M.L., Micropaleontology of the 2013 Typhoon Haiyan overwash sediments from the Leyte Gulf, Philippines, Sedimentary Geology, Volume 339, 15 June 2016, Pages 104-114, ISSN 0037-0738, http://dx.doi.org/10.1016/j.sedgeo.2016.04.001.

Able, K. W. Natural history: an approach whose time has come, passed, and needs to be resurrected – ICES Journal of Marine Science, doi: 10.1093/icesjms/fsw049.

Kennish, M. J., G. P. Sakowicz, and B. Fertig. 2016. Recent trends of Zostera marina (eelgrass) in a highly eutrophic coastal lagoon in the mid-Atlantic region (USA). Open Journal of Ecology, 6:243-253. DOI:10.423/oje.2016.65025

Bradley, S.L., Milne, G.A., Horton, B.P., and Zong, Y., 2016. Modelling sea level data from China and Malay-Thailand to estimate Holocene ice-volume equivalent sea level change. Quaternary Science Reviews, 137, 54-68.

Cahill, N., Kemp, A.C., Horton, B.P. and Parnell, A.C. 2016. A Bayesian hierarchical model for reconstructing relative sea level: from raw data to rates of change. Climate of the Past, 12, 525-542.

Madenjian CP, Jensen OP, Rediske RR, O’Keefe JP, Vastano AR, et al. (2016) Differences in Energy Expenditures and Growth Dilution Explain Higher PCB Concentrations in Male Summer Flounder. PLoS ONE 11(1): e0147223. doi: 10.1371/journal.pone.0147223

Zhang, X., Munroe, D., Haidvogel, D., Powell, E.N.P. 2016. Atlantic surfclam connectivity within the Middle Atlantic Bight: Mechanisms underlying variation in larval transport and settlement. Estuarine, Coastal and Shelf Science, 173: 65-78. doi:10.1016/j.ecss.2016.02.019

Glenn, S. M. et al. Stratified coastal ocean interactions with tropical cyclones. Nat. Commun. 7:10887 doi: 10.1038/ncomms10887 (2016).

Baronas, J. J., Hammond, D. E., Berelson, W. M., McManus, J., and Severmann, S., 2016, Germanium–silicon fractionation in a river-influenced continental margin: The Northern Gulf of Mexico: Geochimica et Cosmochimica Acta, v. 178, p. 124-142. 

Little, S. H., Vance, D., McManus, J., and Severmann, S., 2016, Key role of continental margin sediments in the oceanic mass balance of Zn and Zn isotopes: Geology, v. 44, no. 3, p. 207-210. 

Ndungu, K., Zurbrick, C. M., Stammerjohn, S., Severmann, S., Sherrell, R. M., and Flegal, A. R., 2016, Lead Sources to the Amundsen Sea, West Antarctica: Environmental Science & Technology. 

Houghton, J.L., Foustoukos, D., Flynn T., Vetriani, C., Brandley, A., Fike, D. Thiosulfate oxidation by Thiomicrospira thermophila: metabolic flexibility in response to ambient geochemistry. Environ. Microbiol., in press. doi: 10.1111/1462-2920.13232. 

Segev, Einat, Castañeda, Isla S., Sikes, Elisabeth L., Vlamakis, Hera, Kolter, Roberto, Bacterial influence on alkenones in live microalgae, Journal of Phycology 52 1 1529-8817 http://dx.doi.org/10.1111/jpy.12370 DOI:10.1111/jpy.12370 

Martin, P., N. F. Goodkin, J. A. Stewart, G. L. Foster, E. L. Sikes, H. K. White, S. Hennige, and J. M. Roberts (2016), 13C: A tool to reconstruct Deep-sea coral δ the difference between seawater pH and 11B-derived calcifying fluid pH, Geophys. δ Res. Lett., 43, 299–308, doi:10.1002/2015GL066494. 

Elisabeth L. Sikes, Mea S. Cook, Thomas P. Guilderson, Reduced deep ocean ventilation in the Southern Pacific Ocean during the last glaciation persisted into the deglaciation, Earth and Planetary Science Letters, Volume 438, 15 March 2016, Pages 130-138, ISSN 0012-821X, http://dx.doi.org/10.1016/j.epsl.2015.12.039. (http://www.sciencedirect.com/science/article/pii/S0012821X1500802X)

Sikes, E. L., and T. P. Guilderson (2016), Southwest Pacific Ocean surface reservoir ages since the last glaciation: Circulation insights from multiple-core studies, Paleoceanography, 31, doi:10.1002/2015PA002855. 

Babila, T.L., Rosenthal, Y., Wright J.W. and K.G. Miller (2016). A continental shelf perspective of ocean acidification and temperature evolution during the Paleocene-Eocene thermal maximum. Geology doi:10.1130/G37522.1

R. E. Kopp, A. C. Kemp, K. Bittermann, B. P. Horton, J. P. Donnelly, W. R. Gehrels, C. C. Hay, J. X. Mitrovica, E. D. Morrow, and S. Rahmstorf (2016). Temperature-driven global sea-level variability in the Common Era. Proceedings of the National Academy of Sciences. doi: 10.1073/pnas.1517056113.

Mannino, A., S. Signorini, M. Novak, J. Wilkin, M. Friedrichs, and R. Najjar, (2016), Dissolved organic carbon fluxes in the Middle Atlantic Bight: An integrated approach based on satellite data and ocean model products, J. Geophys. Res. Biogeosci., 121, doi:10.1002/2015JG003031.

McSweeney, J. M., R. J. Chant, and C. K. Sommerfield (2016), Lateral variability of sediment transport in the Delaware Estuary, J. Geophys. Res. Oceans, 120, doi:10.1002/2015JC010974.

Lin, H., Kuzminov, F.I., Park, J., Lee, S., Falkowski, P.G., Gorbunov, M.Y., The fate of photons absorbed by phytoplankton in the global ocean, Science vol 351, issue 6269, pages 107-198 10.1126/science.aab2213

Fuchs, H. L. and G. P. Gerbi (2016). Seascape-level variation in turbulence- and wave-generated hydrodynamic signals experienced by plankton. Progress in Oceanography 141: 109-129.

Dura, T., Hemphill-Haley, E., Sawai, Y., and Horton, B.P., 2016. The application of diatom ecology and biostratigraphy to earthquake and tsunami studies. Earth Science Reviews, 152, 181-197.

Liu, T., Ahn, H., Sun, W., McGuinness, M., Kerkhof, L.J., Haggblom, M.M., Identification of a Ruminococcaceae species as the methyl tert-butyl ether (MTBE) degrading bacterium in a methanogenic consortium Publication Date (Web): January 4, 2016 (Article) Environ. Sci. and Technol: DOI: 10.1021/acs.est.5b04731

Munroe, D.; D. Narvaez; D. Hennen; E. Hofmann; L. Jacobsen; R. Mann, E. Hofmann, E.N. Powell, J. Klinck. 2016. The Roles of Fishing and Bottom Water Temperature as Drivers of Change in Maximum Shell Length in Atlantic Surfclams (Spisula solidissima) Estuarine Coastal and Shelf Sciences. 170: 112–122. doi:10.1016/j.ecss.2016.01.009