DMCS Publications 2010

Zhang, W. G., Wilkin, J. L., Levin, J. C. 2010. Towards an integrated observation and modeling system in the New York Bight using variational methods. 4DVAR data assimilation. Ocean Modelling 35: 134-145. doi:10.1016/j.ocemod.2010.06.006

Zhang, W. G., Wilkin, J. L., Levin, J. C. 2010. Towards an integrated observation and modeling system in the New York Bight using variational methods. Part II. Representer-based observing strategy evaluation . Ocean Modelling 35: 134-145. doi:10.1016/j.ocemod.2010.06.006

Schofield, O., Kohut, J., Glenn, S., Morell, J., Capella, J., Corredor, J., Orcutt, J., Arrott, M., Krueger, I., Meisinger, M., Peach, C., Vernon, F., Chave, A., Chao, Y., Chien, S., Thompson, D., Brown, W., Oliver, M., Boicourt, W. 2010. A regional Slocum glider network in the Mid-Atlnatic coastal waters leverages broad community engagement . Marine Technology Society 44(6, Section 2): 64-74.

Flimlin, G., Macfarlane, S., Rhodes, E., Rhodes, K. 2010. Best Managment practices for the east coast shellfsih aquaculture industry. East Coast Shellfish Growers Association. Sponsored by the USDA, NOAA and Northeasterm Regional Aquaculture Center

Grant Murray, Grant, Teresa Johnson, Bonnie J. McCay, Satsuki Takahashi, and Kevin St. Martin. 2010. Cumulative effects, creeping enclosure, and the marine commons of New Jersey . International Journal of the Commons 4(1): 367-389.

Lester, Sarah E., Karen M. McLeod, Heather M. Tallis, Mary Ruckelhaus, Benjamin S. Halpern, Phillip S. Levin, Francisco P. Chavez, Caroline Pomeroy, Bonnie J. McCay, Christopher Costello, Steven D. Gaines, Amber J. Mace, John A. Barth, David L. Fluharty, Julia K. Parrish. 2010. Science in support of ecosystem-based management for the US West Coast and beyond . Biological Conservation 143: 576-587.

Reichmuth, J.M., P. Weis and J.S. Weis, 2010. Bioaccumulation and depuration of metals in blue crabs (Callinectes sapidus Rathbun) from a contaminated and clean estuary. Environ. Pollut. 158: 361-368.

Weis, J.S. 2010. The role of behavior in the success of invasive crustaceans. Mar. Freshwat. Behav. Physiol. 43: 83-98

Candelmo, A., A. Deshpande, B. Dockum, P. Weis and J. S. Weis 2010. The effect of contaminated prey on feeding, activity, and growth of young-of-the-year bluefish, Pomatomus saltatrix, in the laboratory. Estuaries and Coasts 33: 1025-1038.

Burridge, L., J.S. Weis, F. Cabello, J. Pizarro and K. Bostick 2010. Chemical use in salmon aquaculture: A review of current practices and possible environmental effects. Aquaculture 306: 7-23

Lee, K., Dighton, J. 2011. Neurospora, a potential fungal organism for experimental and evolutionary biology . Fungal Biology Reviews 24: 85-89. doi:10.1016/j.fbr.2010.09.001

Landesman, W. J., Dighton, J. 2010. Response of soil microbial communities and the production of plant-available nitrogen to a two-year rainfall manipulation in the New Jersey Pinelands . Soil Biology & Biochemistry. doi:10.1016/j.soilbio.2010.06.012

Crane, S., Dighton, J., Barkay, T. 2010. Growth responses to and accumulation of mercury by ectomycorrhizal fungi . Fungal Biology 114: 873-880. doi:10.1016/j.funbio.2010.08.004

Landesman, W., Treonis, A. M., Dighton, J. 2010. Efffects of a one-year rainfall manipulation on soil nematode abundances and community composition . Pedobiologia. doi:10.1016/j.pedobi.2010.10.002

Ren, J., X. Liu, F. Jiang, X. Guo and B Liu. 2010. Unusual conservation of mitochondrial gene order in Crassostrea oysters: evidence for recent speciation in Asia . BMC Evolutionary Biology, 10:394.

Wang, H., L. Qian, X. Liu, G. Zhang and X. Guo. 2010. Classification of a common cupped oyster from southern China . Journal Shellfish Research, 29(4): 857-866.

Roarty, H., Glenn, S., Kohut, J., Gong, D., handel, E., Rivera, E., Garner, T., Atkinson, L., Brown, W., Jakubiak, C., Muglia, M., Haines, S., Seim, H. 2010. Operation and application of a regional high-frequency radar network in the Mid-Atlantic Bight . Marine Technology Society. 44(6): 1-13.

Payne, D.L. & Zimmerman, T.D. (2010). Beyond terra firma: Bringing Ocean and Aquatic Sciences to Science Teacher Education. In A. Bodzin, B.S. Klein, & S. Weaver (Eds.) The Inclusion of Environmental Education in Science Teacher Education. (pp. 81-96). New York, NY: Springer.

Able, K. W., Fahay, M. P. 2010. Ecology of Estuarine Fishes: Temperate Waters of the Western North Atlantic .

Lear, C/main/media/downloads H., Mawbey, E. M., Rosenthal, Y. 2010. Cenozoic benthic foraminiferal Mg/Ca and Li/Ca records: Towards unlocking temperatures and saturation states . Paleoceanography 25: doi:10.1029/2009PA001880

Lawrence, K. T., Sosdian, S., White, H. E., Rosenthal, YT. 2010. North Atlantic climate evolution through the Plio-Pleistocene climate transitions . Earth and Planetary Science Letters. 300: 329-342. doi:10.1016/j.epsl.2010.10.013

Buesseler, K. O., McDonnell, A. M. P., Schofield, O. Steinberg, D. K., Ducklow, H. W. 2010. High particle export over the continental shelf of the west Antarctic Peninsula . Geophysical Research Letters 37, L22606, doi:10.1029/2010GL045448

Gilroy, D. J., Jensen, O. P., Allen, B. C., Chandra, S., Ganzorig, B., Hogan, Z., Maxted, J. T., Vander Zanden, M. J. 2010. Home range and seasonal movement of taimen, Hucho taimen, in Mongolia . Ecology of Freswater Fish. doi: 10.1111/j.1600-0633.2010.00434.x

Bakker, V. J., Baum, J. K., Brodie, J. F., Salomon, A. K., Dickson, B. G., Gibbs, H. K., Jensen, O. P., McIntyre, P. B. 2010. The changing landscape of conservation science funding in the United States . Conservation Letters. doi: 10.1111/j.1755-263X.2010.00125.x

Warner, J. C., Geyer, W. R., Arango, H. G. 2010. Using a composite grid in a complex coastal domain to estimate estuarine residence time . Computers & Geosciences. 36: 921-935. doi:10.1016/j.cageo.2009.11.008

Chant, R. J., Fugate, D., Garvey, E. 2010. The shaping of an estuarine superfund site: Roles of evolving dynamics and geomorphology . Estuaries and Coasts. DOI 10.1007/s12237-010-9324-z

Fuchs, H. L., Solow, A. R., Mullineaux, L. S. 2010. Larval esponses to turbulence and temperature in a tidal inlet: Habitat selection by dispersing gastropods? Journal of Marine research. 68: 153-188.

Wright, D. D., Fraze, T. K., Reinfelder, J. R. 2010. The influence of river plume dynamics on trace metal accumulation in calanoid copepods . 55(6): 2487-2502. DOI:10.4319/lo.2010.55.6.2487.

Liu, Y., Weisberg, R. H., MMerz, C. R., Lichtenwalner, S., Kirkpatrick, G. 2010. HF radar performance in a low-energy environment: CODAR SeaSonde experience on the West Florida Shelf . Journal of Atmospheric and Oceanic Technology. 27: 1689-1710. DOI:10.1175/2010JTECHO720.1

Canfield, D. E., Glazer, A. N., Falkowski, P. G. 2010. The evolution and future of Earth's nitrogen cycle . Science. 330, 192. doi: 10.1126/science.1186120

Castelao, R., Glenn, S., Schofield, O. 2010. Temperature, salinity, and densty variability in the central Middle Atlantic Bight . Journal of Geophysical Research. 115. C10005, doi:10.1029/2009JC006082 

Able, K. W., Dobarro, J., Muzeni-Corio, A. M. 2010. An evaluation of boat basin dredging effects: Response of fishes and crabs in a New Jersey estuary . North American Journal of Fisheries Management 30: 1001-1015.

Kimball, M. E., Able, K. W., Grothues, T. W. 2010. Evaluation of long-term response of intertidal creek nekton to Phragmites australis (Common Reed) removal in oligohaline Delaware Bay salt marshes . Restoration Bay. 18(5): 772-779. doi: 10.1111/j.1526-100X.2009.00543.x

Zhang, W. G., Wilkin, J. L., Arango, H. G. 2010. Towards an integrated observation and modeling system in the New York Bight using variational methods. Part I: 4DVAR data assimilation . Ocean Modeling 35: 119-133. doi:10.1016/j.ocemod.2010.08.003

Zhang, W. G., Wilkin, J. L., Levin, J. C. Towards an integrated observation and modeling system in the New York using variational moethods. Part II: Repressenter-based observing strategy evaluation . Ocean Modeling 35: 135-145. doi:10.1016/j.ocemod.2010.06.006

Bricelj, V. M., MacQuarrie, S. P., Doane, J. A. E., Connell, L. B. 2010. Evidence of selection for resistance to paralytic shellfish toxins during the early life history of soft-shell clam (Mya arenaria) populations . Limnology and Oceanography. 55(6): 2463-2475. doi:10.4319/lo.2010.55.6.2463

Miles, T. N., He, R. 2010. Temporal and spatial variability of Chl-a and SST on the South Atlantic Bight: Revisiting with cloud free reconstructions of MODIS satellite imagery . Continental Shelf Research. doi:10.1016/j.csr.2010.08.016

Fiege, D., Ramey, P.A., Ebbe B. 2010. Diversity and distributional patterns of Polychaeta in the deep South Atlantic . Deep-sea Research I 57: 1329-1344

Schofield, O., Glenn, S., Orcutt, J., Arrott, M., Meisinger, M., Gangopadhyay, Brown, W., Signell, R., Moline, M. A., Chao, Y., Chien, S., Thompson, D., Balasuriya, A., Lermusiauz, P., Oliver, M. 2010. Automated sensor networks to advance ocean science . Transaction of the American Geophysical Union 91(39): 345-346. doi:10.1029/2010EO390001.

Oliver, M., Schofield, O., Bidle, K. 2010. Density dependent expression of a diatom retrotransposon. Marine Genomics. doi:10.1016/j.margen.2010.08.006.

Mafra, L. L., Bricelj, M. V., Fennerl, K. 2010. Domoic acid uptake and elimination kinetics in oysters and mussels in relation to body size and anatomical distribution of toxin . Aquatic Toxicology. 100: 17-29. doi:10.1016/j.aquatox.2010.07.002

Robbins, H. M., Bricelj, M. V., Ward, E. J. 2010. In vivo effects of brown tide on the feeding function of the gill of the nrthern quahog Mercenaria mercenaria (Bivalvia: Veneridae) . Biological Bulletin 219: 61-71.

Rona, P. A. 2010. Emerging diversity of hydrothermal systems on slow spreading ocean ridges . In Diversity of Hydrothermal Systems on Slow Spreading Ocean Ridges, Geophysical Monograph Series 188. American Geophysical Union. doi://10.1029/2010GM000944

Fuchs, H. L., Franks P. J. S. 2010. Plankton community properties determined by nutrients and size-selective feeding . Marine Ecology Progress Series. 413: 1-15. doi: 10.3354/meps08716

supplemental material

Moon, H. S., McGuinness, L., Kukkadapu, R. K., Peacock, A. D., Komlos, J., Kerkhof, L. J., Long, P. E., Jaffe, P. R. 2010. Microbial reduction of uranium under iron- and sulfate-reducing conditions: Effects of amended goethite on microbial community composition and dynamics . Water Research. doi:10.1016/j.watres.2010.05.003

Bradely, P. B., Sanderson, M. P., Frischer, M. E., Brofft, J., Booth, M. G., kerkhof, L. J., Bronk, D. A. 2010. Inorganic and organic nitrogen uptake by phytoplankton and heterotrophic bacteria in the stratfied Mid-Atlantic Bight . Estuarine, Coastal and Shelf Science. 88: 429-441. doi:10.1016/j.ecss.2010.02.001

Rose, K. A., Sikes, E. L., Guilderson, T. P., Shane, P., Zahn, R., Spero, H. J. 2010. Upper-ocean-to-atmosphere radiocarbon offsets imply fast deglacial carbon dioxide release . Nature. 466: 1093-1097.doi:10.1038/nature09288 

Cronan, D. S., Rona, P. A., Usui, A. 2010. Introduction to the special issue on marine minerals including a review of papers from the 2008 International Geological Congress (IGC) Marine Minerals Symposium . Marine Georesources and Geotechnology, 28: 189-191. DOI: 10.1080/1064119X.2010.501095

Kahl, A. L., Schofield, O., Fraser, W. R. 2010. Autonomous gliders reveal features of the water column associated with foraging by Adelie pengiuns . Integrative and Compartitive Biology. doi: 10.1093/icb/icb098

Linsley, B. K., Rosenthal, Y., Oppo, D. W. 2010. Holocene evolution of the Indoesian throughflow and the western Pacific warm pool . Nature Geoscience. DOI:10.1038/NGEO920

DiLeo, K., Donat, K., Min-Venditti, A., Dighton, J., 2010. A correlation between chytrid abundance and ecological integrity in New Jersey pine barrens waters . Fungal Ecology. doi:10.1016/j.funeco.2009.11.004

Hunter, E. J., Chant, R. J., Wilkin, J. L., Kohut, J. 2010. High‐frequency forcing and subtidal response of the Hudson River plume . Journal of Geophysical Research, Vol. 115: C07012, doi:10.1029/2009JC005620

Vittadello, M., Gorbunov, M. Y., Mastrogiovanni, D. T., Wielunski, L. S., Garfunkel, E. L., Guerrero, F., Kirilovsky, D., Sugiura, M., Rutherford, A. W., Safari, A., Falkowski, P. G. 2010. Photoelectron generation by photosystem II core complexes tethered to gold surfaces . ChemSusChem 3: 471-475. DOI: 10.1002/cssc.200900255

suplementary material

coverpage

Druon, J. N., A. Mannino, S. Signorini, C. McClain, M. Friedrichs, J. Wilkin and K. Fennel, Modeling the dynamics and export of dissolved organic matter in the Northeastern U.S. continental shelf , Estuarine and Coastal Shelf Science, 2010, 88, 488-507.

Severmann, S., MCManus, J., Berleson, W., M., Hammond, D. E. 2010. The continental shelf benthic iron flux and its isotope composition . Geochimica et Cosmochimica Acta 74: 3984-4004. doi:10.1016/j.gca.2010.04.022

Oppo, D. W, Rosenthal, Y. 2010. The Great Indo-Pacific Communicator . Science 328, 1520 DOI:10.1126/science.1187273

Schofield, O., Ducklow, H. W., Martinson, D. G., Meredith, M. P., Moline, M. A., Fraser, W. R. 2010. How Do Polar Marine Ecosystems Respond to Rapid Climate Change? Science 328, 1520 DOI: 10.1126/science.1185779

Science Debate: Comment on "Deep-Sea Temperature and Ice Volume Changes Across the Pliocene-Pleistocene Climate Transitions " Yu, J., Broecker, W. S. Response to Comment on "Deep-Sea Temperature and Ice Volume Changes Across the Pliocene-Pleistocene Climate Transitions" Sosdian, S., Rosenthal, Y. Science 328, 1480-d (2010). DOI: 10.1126/science.1186768

Roarty, H. J., Barrick, D. E., Kohut, J. T., Glenn, S. M. 2010. Dual-use of compact HF radars for the detection of mid- and large-size vessels . Turkish Journal of Electrical Engineering and Computer Science. 18(3):373-388. doi:10.3906/elk-0912-15.

Lobe, H., Haldeman, C., Glenn, S. M. 2010. ClearSignal coating controls biofouling on Rutgers glider crossing . Sea Technology vol 51.

Zhang, W. G., Wilkin, J. L., Schofield, O. 2010. Simulation of water age and residence time in New York Bight . Journal of Physical Oceanography. doi: 10.1175/2009JPO4249.1

Benoit-Bird, K. J., Moline, M. A., Schofield, O. M., Robbins, I. C., Waluk, C. M. 2010. Zooplankton avoidance of a profiled open-path fluorometer . Journal of Plankton Research. doi:10.1093/plankt/fbq053

Gleick, P. H., et al. (255 signatories) 2010. Climate change and the integrity of science . Science vol 328: 689-690. 

Zhang, L. and X. Guo. 2010. Development and validation of single nucleotide polymorphism markers in the eastern oyster Crassostrea virginica Gmelin by mining ESTs and resequencing . Aquaculture, 302:124-129.

Wang, Y., A. Wang and X. Guo. 2010. Development and characterization of polymorphic microsatellite markers for the northern quahog Mercenaria mercenaria (Linnaeus, 1758) . J. Shellfish Res., 29(1):77-88.

Glenn, S. M., Schofield, O., Kohut, J. 2010. Celebrating Hank Stommel's Slocum Mission - Another dawn in the new age of oceanography. Operational Oceanography. 3(1). Editorial.

Castelao, R., Chant, R., Glenn, S. M., Schofield, O. 2010. The effects of tides and oscillatory winds on the subtidal inner-shelf cross-shelf circulation. Journal of Physical Oceanography. 40: 775-788. doi: 10.1175/2009JPO4273.1

Cermeno, P., de Vargas, C., Abrantes, F., Falkowski, P. G. 2010. Phytoplankton biogeography and community stability , PLoS ONE 5(4):e10037 doi:10.1371/journal.pone.0010037

Gong, D., Kohut, J. T., Glenn, S. M. 2010. Seasonal climatology of wind-driven circulation on the New Jersey Shelf. Journal of Geophysical Research. vol 115, C04006, doi:10.1029/2009JC005520

Barange, M., Field, J., Harris, R., Hofmann, E., Perry, I., Werner, C. 2010. Marine Ecosystems and Global Change , Oxford University Press. 438pp

Katz, M. E., Cramer, B. S., Franzese, A., Honisch, B., Miller, K. G., Rosenthal, Y., Wright, J. D. 2010. Traditional and emerging geochemical proxies in foraminifera . Journal of Foraminiferal Research. 40(2): 165-192.

Montes-Hugo, M., C. Sweeney, S. C. Doney, H. Ducklow, R. Frouin, D. G., Martinson, S. Stammerjohn, and O. Schofield 2010. Seasonal forcing of summer dissolved inorganic carbon and chlorophyll a on the western shelf of the Antarctic Peninsula. Journal Geophysical Research, 115, C03024, doi:10.1029/2009JC005267.

Sadekov, A. Y., Eggins, S. M., Klinkhammer, G. P., Rosenthal, Y. 2010. Effects of seafloor and laboratory dissolution on the Mg/Ca composition of Globigerinoides sacculifer and Orbulina universa tests — A laser ablation ICPMS microanalysis perspective . Earth and Planetary Science Letters. 292: 312-324. doi:10.1016/j.epsl.2010.01.039

Youngster, L. K. G, Kerkhof, L. J., and Max M. Häggblom. 2010. Community characterization of anaerobic methyl tert-butyl ether (MTBE)-degrading enrichment cultures . FEMS Micro. Ecol. published online Jan., 22, 2010

Gallagher, E. M., Young, L. Y., McGuinness, L. M., and Lee J. Kerkhof. 2010. Detection of 2,4,6-Trinitrotoluene-Utilizing Anaerobic Bacteria by 15N and 13C Incorporation . Appl. Environ. Microbiol. 76: 1695–1698

Rangwala, I., Miller, J. R. 2010. Twentieth century temperature trends in Colorado's San Juan Mountains . Arctic, Antarctic and Alpine Research, 42(1): 89-97.

Mafra, L.L. Jr., V. M. Bricelj, C. Ouellette, S. S. Bates, 2010. Feeding mechanics as the basis for differential uptake of the neurotoxin domoic acid by oysters, Crassostrea virginica, and mussels, Mytilus edulis . Aquatic Toxicology, 97(2): 160–171.

Tierney, J. E., Oppo, D. W., Rosenthal, Y., Russell, J. M., Linsely, B. K. 2010. Coordinated hydrological regimes in the Indo‐Pacific region during the past two millennia . Paleooceanography VOL. 25, PA1102, doi:10.1029/2009PA001871, 2010

LaVigne, M., Matthews, K. A., Grottoli, A., Cobb, K. M., Anagnostou, E., Cabioch, G., Sherrell, R. M. 2010. Coral skeleton P/Ca proxy for seawater phosphate: Multi-colony calibration with a contemporaneous seawater phosphate record . Geochimica et Cosmochimica Acta. 74: 1282-1293. doi:10.1016/j.gca2009.11.002

Duan Y., Severmann S., Anbar A. D., Lyons T. W., Gordon G. W., and Sageman B. B. (2010) Isotopic evidence for Fe cycling and repartitioning in ancient oxygen-deficient settings: Examples from black shales of the mid-to-late Devonian Appalachian basin . Earth Planet. Sci. Let. 290, 244-253.

Liu, H., Aris-Brosou, S., Probert I., de Vargas, C. 2010. A timeline of environmental genetics of the haptophytes . Molecular Biology and Evolution. 27: 161-176.

Kennish, M. J. 2010. Eutrophication of Mid-Atlantic Coastal Bays. Bulletin of the New Jersey Academy of Science, 54: 5-12.