DMCS Publications 2006

Bergey, L., and Weis, J.S. 2006. Immobility in five species of fiddler crabs, genus Uca. J. Crust. Biol. 26: 82-84.

Weis, J.S. and P. Weis.2006. Effects of wood treated with chromated copper arsenic on aquatic biota. In: Environmental Impacts of Treated Wood, ed. T. Townsend & H. Solo-Gabriele. CRC Press pp 173-190.

Wirgin, I., J.S. Weis, and A. McElroy 2006. Physiological and Genetic Aspects of Toxicity in Hudson River species. In: J. Levinton and J. Waldman, eds. The Hudson River Estuary. Cambridge University Press pp 441-464.

Sullivan, M.C., K.W. Able, J.A. Hare and H.J. Walsh. 2006. Anguilla rostrata glass eel ingress into two U.S. east coast estuaries:

patterns, processes and implications for adult abundance. Journal of Fish Biology 69:1081-1101.

Ragueneau, O., S. Schultes, K. Bidle, P. Claquin, and B. Moriceau. 2006. Si and C interactions in the world ocean: Importance of ecological processes and implications for the role of diatoms in the biological pump. Global Biogeochemical Cycles 20: GB4SO2, doi:10.1029/2006GB002688.

Roarty, H.J. and Bruno M.S. 2006. Laboratory Measurements of Bed Load Sediment Transport Dynamics. Journal of Waterway, Port, Coastal and Ocean Engineering, Vol. 132, No. 3, 199-211

Kohut, J.T., Roarty, H.J. and Glenn S.M. 2006. Characterizing Observed Environmental Variability with HF Doppler Radar Surface Current Mappers and Acoustic Doppler Current Profilers: Environmental Variability in the Coastal Ocean” IEEE Journal OF Oceanic Engineering, Vol. 31, No. 4, October 2006, 876-884

Tugay, T., Zhdanov, M. N., Zheltonozhsky, V., Sadovnikov, L., Dighton, J. 2006. The influence of ionizing radiation on spore germination and emergent hyphal growth response reaction of microfungi. Mycologia. 98: 521-527.

Gray, D. M., Dighton, J. 2006. Mineralization of forest litter nutrients by heat and combustion. Soil Biology & Biochemistry 38; 1469-1477.

Zheng, H., G. Zhang and X. Guo. 2006. Heterosis between two stocks of the bay scallop, Argopecten irradians irradians Lamarck (1819). J. Shellfish Res. , 25(3):807-812.

Yang, H. and X. Guo. 2006. Tetraploid induction by inhibiting mitosis I with heat shock, cold shock and nocodazole in the hard clam Mercenaria mercenaria (Linnaeus, 1758). Marine Biotechnol. , 8:501-510.

Alcivar-Warren, A., D. Meehan-Meola, Y. Wang , , X. Guo, L. Zhou, J. Xiang, S. Moss, S. Arce, W. Warren, Z. Xu and K. Bell. 2006. Isolation and mapping of telomeric pentanucleotide (TAACC) n repeats of the Pacific whiteleg shrimp, Penaeus vannamei , using fluorescence in situ hybridization. Marine Biotechnology , 8:467-480.

Liu, X., X. Liu, X. Guo, Q. Gao and G. Zhang. 2006. A preliminary genetic linkage map of the Pacific abalone Haliotis discus hannai Ino. Marine Biotechnology , 8:386-397.

Zheng, H., G. Zhang, X. Liu and X. Guo. 2006. Sustained response to selection in an introduced population of the hermaphroditic bay scallop Argopecten irradians irradians Lamarck (1819). Aquaculture , 255:579-585.

Wilkin, J., and W. Zhang, (2006), Modes of mesoscale sea surface height and temperature variability in the East Australian Current, Journal of Geophysical Research, 112, C01013, doi:10.1029/2006JC003590

Fennel, K., J. Wilkin, J. Levin, J. Moisan, J. O'Reilly, and D. Haidvogel, 2006: Nitrogen cycling in the Middle Atlantic Bight: Results from a three-dimensional model and implications for the North Atlantic nitrogen budget. Global Biogeochemical Cycles, 20, GB3007, doi:10.1029/2005GB002456.

He, R. and J. L. Wilkin, (2006), Barotropic tides on the southeast New England shelf: A view from a hybrid data assimilative modeling approach.

Journal of Geophysical Research, 111, C08002, doi:10.1029/2005JC003254.

Ellin, R., Buskek, D. 2006. Adaptation of ray's fluid thioglycollate medium assay to detect and quantify planktonic stages of Perkinsus spp. parasites. J. of Shellfish Res. 25(3): 1037-1042.

Taylor, D.L. and K.W. Able. 2006. Cohort dynamics of summer-spawned bluefish as determined by length-frequency and otolith microstructure analyses. Trans. Am. Fish. Soc. 135: 955-969

Davidson , E.A. , and S. Seitzinger . 2006. The Enigma of Progress in Denitrification Research. Ecological Applications.16(6):2057-2063.

Altieri, K. E. , A. G. Carlton, B. J. Turpin , and S. P. Seitzinger . 2006. Formation of oligomers in cloud processing: reactions of isoprene oxidation products. Environmental Science and Technology. 40: 4956-4960.

Taylor, D.L., P.M. Rowe and K. W. Able. 2006. Habitat use of the inner continental shelf off southern New Jersey by summer-spawned bluefish (/Pomatomus saltatrix/). Fishery Bulletin 104: 593-604.

Wiegner, T.N. , S.P. Seitzinger , P.M. Glibert , and D.A. Bronk . 2006. Bioavailability of dissolved organic nitrogen and carbon from nine rivers in the eastern United States . Aquatic Microbial Ecology 43:277-287.

Glibert, P.M., J. Harrison, C. Heil, and S. P. Seitzinger . 2006. Escalating worldwide use of urea – a global change contributing to coastal eutrophication. Biogeochemistry, 77:441-463 DOI 10.1007/s10533-3070-0.

Lerczak, J. A., Geyer, W. R., Chant, R. J. (2007). Mechanisms driving the time-dependent salt flux in a partially stratified estuary. Journal of Physical Oceanography 36: 2296-2311.

Wollheim, W. M., C. J. Vorosmarty, B. J. Peterson, S. P. Seitzinger, and C. S. Hopkinson. 2006. Relationship between river size and nutrient removal. Geophysical Research Letters 33: L06410 DOI:10.1029/2006GL025845.

Carlton , A.G. , B.J. Turpin , H. Lim , K.E. Altieri, and S. Seitzinger . 2006. Link between isoprene and secondary organic aerosol (SOA): Pyruvic acid oxidation yields low volatility organic acids in clouds. Geophysical Research Letters 33: L06822 DOI 10.1029/2005GL025374

Seitzinger, S.P. , J. Harrison, J. Bohlke , A. Bouwman , R. Lowrance , B. Peterson , C. Tobias , and G. Van Drecht . 2006. Denitrification across landscapes and waterscapes: a synthesis. Ecological Applications. 16(6):2064-2090.

Pälike, H., Norris, R.D., Herrle, J.O., Wilson, P.A., Coxall, H.K., Lear, C.H., Shackleton, N.J., Tripati, A.K. and Wade, B.S. 2006. The heartbeat of the Oligocene climate system. Science, 314 (5807): 1894-1898.

Premoli Silva, I., Wade, B.S. and Pearson, P.N. 2006. Chapter 7: Taxonomy of Globigerinatheka and Orbulinoides. In: Pearson, P.N., Olsson, R.K., Huber, B.T., Hemleben, C. and Berggren, W.A. (Eds.), Atlas of Eocene Planktonic Foraminifera, Cushman Foundation Special Publication, 41: 169-212.

Berggren, W. A., Pearson, P. N., Huber, B. T. and Wade, B. S. 2006. Chapter 9: Taxonomy, Biostratigraphy and Phylogeny of Eocene Acarinina. In: Pearson, P. N., Olsson, R. K., Huber, B. T., Hemleben, C and Berggren, W. A. (Eds.), Atlas of Eocene Planktonic Foraminifera, Cushman Foundation Special Publication, 41: 257-326.

Nicholas, C.J., Pearson, P.N., Bown, P.R., Dunkley Jones T., Huber, B.T., Karega, A., Lees, J.A., McMillan, I. K., O'Halloran, A., Singano, J.M., Wade, B.S. 2006. Stratigraphy and sedimentology of the Upper Cretaceous to Paleogene Kilwa Group, Tanzania. Journal of Africa Earth Sciences, 45: 431-466.

Sylvan, J., Dortch, Q., Nelson, D. M., Maierbrown, A., Morrison W., Ammerman, J. W. 2006. Phosphorus limits phytoplankton growth on the Louisiana Shelf during the period of hypoxia formation. Environ. Sci. Technol., 40, 7548-7553.

Able, K.W., S.M. Hagan and S.A. Brown. 2006. Habitat use, movement and growth of young-of-the-year Fundulus spp. in southern New Jersey salt marshes: comparisons based on tag/recapture. Journal of Experimental Marine Biology and Ecology 335 (2006) 177-187.

Able, K.W. and J.C. Lamonaca. 2006. Scale formation in selected western North Atlantic flatfishes. Journal of Fish Biology 68: 1679-1692.

Sullivan, M.C., R.K. Cowen, K.W. Able, and M.P. Fahay. 2006. Assessing habitat suitability of young-of-the-year benthic fishes on the NY Bight continental shelf using a research submersible. Continental Shelf Research 26:1551-1570.

Hunter, K.L., D.A. Fox, L.M. Brown, and K.W. Able. 2006. Responses of resident marsh fishes to stages of Phragmites australis invasion in three mid-Atlantic estuaries, U.S.A. Estuaries and Coasts 29(3):487-498.

Hunter, K.L., M. Fox and K.W. Able. 2006. Habitat influences on reproductive allocation and growth of the mummichog (Fundulus

heteroclitus) in a coastal salt marsh. Marine Biology (published electronically - MABI-D-06-00017.1)

Francis, J.A. and E. Hunter, 2006: New insight into the disappearing Arctic sea ice, Eos Tranactions of the AGU, 87, 509-524

Litchman, E., Klausmeier, C. A., Miller, J. R., Schofield, O., Falkowski, P. G. 2006. Multi-nutrient, multi-group model of the present and future oceanic phytoplankton communities. Biogeosciences 3: 585-606.

Kato, S., N.G. Loeb, P. Minnis, J.A. Francis, and T.P. Charlock, 2006: Seasonal and interannual variations of top-of-atmosphere irradiance and cloud cover over polar regions derived from the CERES data set. Geophys. Res. Lett., VOL. 33, L19804, doi:10.1029/2006GL026685.

Liu, Y. J.R. Key, A. Schweiger, and J.A. Francis, 2006: Characteristics of Satellite-Derived C lear-Sky Atmospheric Temperature Inversion Strength in the Arctic, 1980–96. J. Clim., 19, 4902

Lerczak, J., W.R. Geyer and R.J. Chant 2006. Mechanisms driving the time-dependent salt flux in partially stratified estuary. Journal of Physical Oceanography, Vol. 36, No. 12, pages 2283–2298.

Shaked, Y., C. de Vargas (2006). Pelagic photosymbiosis: rDNA assessment of diversity and evolution of dinoflagellate symbionts and planktonic foraminiferal hosts. Marine Ecology progress series 325: 59-71.

Quijón, P. A.,· J. P. Grassle, · J. M. Rosario (2006). Naticid snail predation on early post-settlement surfclams (Spisula solidissima) on the inner continental shelf of New Jersey, USA. Marine Biology DOI 10.1007/s00227-006-0399-9

Wolfe-Simon, F., Trey, A., Starovoytov, V., Reinfelder, J. R., Schofield , O ., Falkowski, P. G. (2006). The localization and role of MnSOD in diatoms. Plant Physiology DOI:10.1104/pp.106.088963

Allam, B. and S. E. Ford. 2006. Effects of the pathogenic Vibrio tapetis on defence factors of susceptible and non-susceptible bivalve species : I. Changes in hemocytes following in vitro challenge. Fish and Shellfish Immunology 20:374-383.

Allam, B., C. Paillard, M. Auffret, and S. Ford . 2006. Effects of the pathogenic Vibrio tapetis on defence factors of susceptible and non-susceptible bivalve species : II. Cellular and biochemical changes following in vivo challenge. Fish and Shellfish Immunology 20:384-397.

Ford, S.E., M. Cummings and E.N. Powell. 2006. Estimating mortality in natural assemblages of oysters. Estuaries and Coasts 29:361-374.

Ford, S.E. and R. Smolowitz. 2006. Perkinsus marinus infection cycles in the parasite's newly established northern range. Marine Biology. DOI 10.1007/s00227-006-0454-6

Ford, S. E. and M. M. Chintala 2006. Northward expansion of a marine parasite: Testing the role of cold adaptation. J. Experimental Marine Biology and Ecology. 339:226-235.

Nordstrom, K.F., N.L. Jackson, D.R. Smith and R.G. Weber. 2006. Transport of horseshoe crab eggs by waves and swash on an estuarine beach: implications for foraging shorebirds. Estuarine Coastal and Shelf Science, 70: 438-448.

Reed, A.J., Lutz, R.A., and Vetriani, C. (2006). Vertical Distribution and Diversity of Bacteria and Archaea in Sulfide and Methane-Rich Cold Seep Sediments Located at the Base of the Florida Escarpment. Extremophiles 10:199-211.

McGuinness, L. M, Salganik, M., Vega, L., Pickering, K. D. and Lee J. Kerkhof. (2006). Replicability of Bacterial Communities in Denitrifying Bioreactors as Measured by PCR/T-RFLP Analysis. Environmental Science and Techology 40: 509-515.

Rona, P. A., Bemis, K. G., Jones, C. D., Jones, C. D., Jackson, D. R., Mitsuzawa, K., Silver, D. (2006). Entrainment and bending in a major hydrothermal plume, Main Endeavour Field, Juan de Fuca Ridge. Geophysical Research letters 33(L19313) doi:10.1029/2006GK0272211.

Finkel, Z. V., Quigg, A. S., Raven, J. A., Reinfelder, J. R., Schofield , O ., Falkowski P. G.(2006). Irradiance and the elemental stoichiometry of marine phytoplankton. Limnology and Oceanography 51(6): 2690-2701.

Ma H, Grassle JP, Chant JC (2006) Vertical distribution of bivalve larvae along a cross- shelf transect during summer upwelling and downwelling. Marine Biology 149:1123-1138

Ma, H., J. P. Grassle & J. M. Rosario (2006). Initial recruitment and growth of surfclams (Spisula solidissima Dillwyn) on the inner continental shelf of New Jersey. Journal of Shellfish Research 25(2):481-489.

Ramey, P.A. , Fiege, D. and Leander B.S. 2006. A new species of Polygordius (Polychaeta: Polygordiidae) from the inner continental shelf and in bays and harbours of the north-eastern United States . Journal of the Marine Biological association of the United Kingdom . 86:1025-1034.

Kim, Y. and E.N. Powell. 2006. Relationships among parasites and pathologies in sentinel bivalves: NOAA Status and Trends 'Mussel Watch' Program. Bulletin of Marine Science 79:83-111.

Serreze, M.C. and J. Francis, 2006: The Arctic amplification debate.Climatic Change, doi: 10.1007/s10584-005-9017-y.

Serreze, M.C. and J. Francis, 2006: The Arctic on the Fast Track of Change, Weather, 61, 65-69.

Shane, P. A., E. L. Sikes, and T. P. Guilderson (2006), Tephra beds in deep-sea cores off northern New Zealand: implications for the history of Taupo Volcanic Zone, Mayor Island, and White Island volcanoes, Journal of Volcanic and Geothermal Research , 154 , 276-290.

Kim, Y., K. A. Ashton-Alcox, and E. N. Powell. 2006. Histological Techniques for Marine Bivalve Molluscs: Update. NOAA Technical Memorandum NOS NCCOS 27, Silver Spring, MD. 76 pp. Location URL:

Quijón , P. A. , Grassle, J. P., · Rosario, J. M. (2006) Naticid snail predation on early post-settlement surfclams (Spisula solidissima) on the inner continental shelf of New Jersey, USA. Marine Biology DOI 10.1007/s00227-006-0399-9

Craig, S. E., Lohrenz, S. E., Lee, Z., Mahoney, K. L., Kirkpatrick, G. J., Schofield, O., Steward, R. 2006. Use of hyperspectral remote sensing reflectance for detection and assessment of the harmful alga, Karenia brevis. Applied Optics 45(21): 5414- 5425.

Leander, B. S., Ramey, P. 2006. Cellular Identity of a Novel Small Subunit rDNA Sequence Clade of Apicomplexans: Description of the Marine Parasite Rhytidocystis polygordiae n. sp. (Host: Polygordius sp., Polychaeta). Journal of Eukaryote Microbiology 53(4): 280-291.

Schofield, O., J. Kerfoot, K. Mahoney, M. Moline, M. Oliver, S. Lohrenz, and G. Kirkpatrick. 2006. Vertical migration of the toxic dinoflagellate Karenia brevis and the impact on ocean optical properties. Journal Geophysical Research, 111, C06009, doi:10.1029/2005JC003115

Song, L., W. Xu, C. Li, H. Li, L. Wu, J. Xiang and X. Guo. 2006. Development of expressed sequence tags from the bay scallop, Argopecten irradians irradians. Marine Biotechnology, 8(2):161-169.

Yu, Z. and X. Guo. 2006. Identification and mapping of disease-resistance QTL in the eastern oyster, Crassostrea virginica Gmelin. Aquaculture,


Gruber, D.F, Simjouw, J-P. Seitzinger, S.P. and G. L. Taghon. 2006. Dynamics and Characterization of Refractory Dissolved Organic Matter Produced by a Pure Bacterial Culture in an Experimental Predator-Prey System. Applied and Environmental Microbiology 72(6):4184-4191.

Iglesias-Rodriguez, D., Schofield , O ., Batley, J., Probert, I. , Medlin, L.K., Hayes, P.K. 2006. Extensive intraspecific genetic diversity in the marine coccolithophorid Emiliania huxleyi : The use of microsatellite analysis in marine phytoplankton populations studies. Journal of Phycology doi: 10.1111/j.1529-8817.2006.00231. 1-12.

Wade, B. S. and Bown, P. R. 2006. Calcareous nannofossils in extreme environments: The Messinian Salinity Event. Palaeogeography, Palaeoclimatology, Palaeoecology, 233 (3-4): 271-286.

Irwin, A., Finkel, Z., Schofield , O ., Falkowski P. 2006. Scaling-up from nutrient physiology to the size-structure of phytoplankton communities. Journal of Plankton Research 28: 1-13.

Yang, H. and X. Guo . 2006. Polyploid induction by heat shock-induced meiosis and mitosis inhibition in the dwarf surfclam Mulinia lateralis Say. Aquaculture, 252:171-182.

J. Levin, D.B. Haidvogel, B. Chua, A.F.Bennett, M. Iskandarani 2006. Euler-Lagrange Equations for the Spectral Element Shallow Water System. Ocean Modeling, 12, 2006, 348-377

Able, K.W. and J.T. Duffy-Anderson. 2006. Impacts of piers on juvenile fishes and selected invertebrates in the lower Hudson River. In the Hudson River Estuary. Cambridge University Press. New York, pp.428-440.

Able, K.W., M.P. Fahay, D.A. Witting and R.S. McBride. 2006. Fish settlement in the ocean vs. estuary: comparison of pelagic larval and settled juvenile composition and abundance from southern New Jersey, USA. Est. Coast. Shelf Sci. 66: 280-290.

Hentschel, B.T. and A.A. Larson. 2006. Hydrodynamic mediation of density-dependent growth and adult-juvenile interactions of a spionid polychaete. Limnol. Oceanogr. 51(2): 1031-1037.

Bushek, D., Boyd, S. 2006. Seasonal abundance and occurence of the Asian isopod Synidotea laevidorsalis in Deleware Bay, USA. Biological Invasions. DOI 00:1-6. 10.1007/s10530-005-2890-5

Quigg, A., J.R. Reinfelder, and N.S. Fisher (2006) Copper uptake kinetics in diverse marine phytoplankton. Limnol. Oceanogr. 51: 893-899.