2022-05-21T02:42:08Z:proc_rutgers_gliders_to_dac.sh:INFO:Processing user-specified deployments [Line 55]
2022-05-21T02:42:08Z:proc_rutgers_gliders_to_dac.sh:INFO:Active deployment: ru34-20220520T1538 [Line 61]
2022-05-21T02:42:08Z:proc_rutgers_gliders_to_dac.sh:INFO:Processing ALL available files for deployments: [Line 66]
2022-05-21T02:42:08Z:proc_rutgers_gliders_to_dac.sh:INFO:ru34-20220520T1538 [Line 69]
2022-05-21T02:42:09Z:batch_process_to_dac.sh:INFO:Processing user-specified deployments [Line 76]
2022-05-21T02:42:09Z:batch_process_to_dac.sh:INFO:Processing the following deployments: [Line 80]
2022-05-21T02:42:09Z:batch_process_to_dac.sh:INFO:ru34-20220520T1538 [Line 83]
Deployment directory: 2022/ru34-20220520T1538
2022-05-21T02:42:09Z:batch_process_to_dac.sh:INFO:sbd path: /home/coolgroup/slocum/deployments/2022/ru34-20220520T1538/data/in/ascii/sbd [Line 130]
2022-05-21T02:42:09Z:batch_process_to_dac.sh:INFO:sbd queue path: /home/coolgroup/slocum/deployments/2022/ru34-20220520T1538/data/in/ascii/queue [Line 136]
2022-05-21T02:42:09Z:batch_process_to_dac.sh:INFO:NetCDF configuration path: /home/coolgroup/slocum/deployments/2022/ru34-20220520T1538/config/ngdac-profile [Line 143]
2022-05-21T02:42:09Z:batch_process_to_dac.sh:INFO:NetCDF output path: /home/coolgroup/slocum/deployments/2022/ru34-20220520T1538/data/out/nc/ngdac-profile/rt [Line 167]
2022-05-21T02:42:09Z:batch_process_to_dac.sh:INFO:Log path: /home/coolgroup/slocum/deployments/2022/ru34-20220520T1538/proc-logs [Line 175]
2022-05-21T02:42:09Z:batch_process_to_dac.sh:INFO:Processing all sbd files... [Line 184]
2022-05-21T02:42:09Z:batch_process_to_dac.sh:INFO:NetCDF processing logged to: /home/coolgroup/slocum/deployments/2022/ru34-20220520T1538/proc-logs/ru34-20220520T1538-ngdac-profiles.log [Line 203]
2022-05-20 22:42:10,531:dba_to_profile_nc:INFO:Writing science NetCDF files [line 67]
/home/kerfoot/code/gncutils/gncutils/yo/__init__.py:128: RuntimeWarning: invalid value encountered in less_equal
  est_data[np.any(est_data <= 0, axis=1), :] = float('nan')
2022-05-20 22:42:10,587:slocum:WARNING:Alternate CTD sensors not found in /home/coolgroup/slocum/deployments/2022/ru34-20220520T1538/data/in/ascii/queue/ru34_2022_139_3_0_sbd.dat [line 492]
2022-05-20 22:42:10,591:ProfileNetCDFWriter:INFO:ru34_2022_139_3_0_sbd.dat 4 profiles indexed [line 198]
/home/kerfoot/code/gncutils/gncutils/yo/__init__.py:128: RuntimeWarning: invalid value encountered in less_equal
  est_data[np.any(est_data <= 0, axis=1), :] = float('nan')
2022-05-20 22:42:13,125:slocum:WARNING:Alternate CTD sensors not found in /home/coolgroup/slocum/deployments/2022/ru34-20220520T1538/data/in/ascii/queue/ru34_2022_139_4_0_sbd.dat [line 492]
2022-05-20 22:42:13,149:ProfileNetCDFWriter:INFO:ru34_2022_139_4_0_sbd.dat 36 profiles indexed [line 198]
/home/kerfoot/code/gncutils/gncutils/yo/__init__.py:128: RuntimeWarning: invalid value encountered in less_equal
  est_data[np.any(est_data <= 0, axis=1), :] = float('nan')
2022-05-20 22:42:33,942:slocum:WARNING:Alternate CTD sensors not found in /home/coolgroup/slocum/deployments/2022/ru34-20220520T1538/data/in/ascii/queue/ru34_2022_139_5_1_sbd.dat [line 492]
2022-05-20 22:42:33,951:ProfileNetCDFWriter:INFO:ru34_2022_139_5_1_sbd.dat 11 profiles indexed [line 198]
/home/kerfoot/code/gncutils/gncutils/yo/__init__.py:128: RuntimeWarning: invalid value encountered in less_equal
  est_data[np.any(est_data <= 0, axis=1), :] = float('nan')
2022-05-20 22:42:40,591:slocum:WARNING:Alternate CTD sensors not found in /home/coolgroup/slocum/deployments/2022/ru34-20220520T1538/data/in/ascii/queue/ru34_2022_139_5_2_sbd.dat [line 492]
2022-05-20 22:42:40,602:ProfileNetCDFWriter:INFO:ru34_2022_139_5_2_sbd.dat 14 profiles indexed [line 198]
/home/kerfoot/code/gncutils/gncutils/yo/__init__.py:128: RuntimeWarning: invalid value encountered in less_equal
  est_data[np.any(est_data <= 0, axis=1), :] = float('nan')
2022-05-20 22:42:48,975:slocum:WARNING:Alternate CTD sensors not found in /home/coolgroup/slocum/deployments/2022/ru34-20220520T1538/data/in/ascii/queue/ru34_2022_139_5_4_sbd.dat [line 492]
2022-05-20 22:42:48,982:ProfileNetCDFWriter:INFO:ru34_2022_139_5_4_sbd.dat 8 profiles indexed [line 198]
2022-05-20 22:42:53,535:dba_to_profile_nc:INFO:73 NetCDF files written: /home/coolgroup/slocum/deployments/2022/ru34-20220520T1538/data/out/nc/ngdac-profile/rt [line 104]
/home/coolgroup/slocum/deployments/2022/ru34-20220520T1538/data/out/nc/ngdac-profile/rt/ru34_20220520T154014Z_rt.nc
/home/coolgroup/slocum/deployments/2022/ru34-20220520T1538/data/out/nc/ngdac-profile/rt/ru34_20220520T154231Z_rt.nc
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2022-05-21T02:42:53Z:batch_process_to_dac.sh:INFO:Cleaning up sbd queue path... [Line 214]
2022-05-21T02:42:54Z:ftp_deployment_ncfiles_to_dac.sh:INFO:Processing user-specified deployments [Line 77]
2022-05-21T02:42:54Z:ftp_deployment_ncfiles_to_dac.sh:INFO:Processing the following deployments: [Line 81]
2022-05-21T02:42:54Z:ftp_deployment_ncfiles_to_dac.sh:INFO:ru34-20220520T1538 [Line 84]
Deployment directory: 2022/ru34-20220520T1538
2022-05-21T02:42:54Z:ftp_deployment_ncfiles_to_dac.sh:INFO:NetCDF output path: /home/coolgroup/slocum/deployments/2022/ru34-20220520T1538/data/out/nc/ngdac-profile/rt [Line 120]
2022-05-21T02:42:54Z:ftp_deployment_ncfiles_to_dac.sh:INFO:Log path: /home/coolgroup/slocum/deployments/2022/ru34-20220520T1538/proc-logs [Line 127]
2022-05-21T02:42:54Z:ftp_deployment_ncfiles_to_dac.sh:INFO:Uploading NetCDF files... [Line 147]
/home/kerfoot/code/project-scripts/rucool/ftp_deployment_ncfiles_to_dac.sh: line 152: ftp_nc_to_dac.py: command not found
2022-05-21T02:42:55Z:proc_rutgers_gliders_to_dac.sh:INFO:Archiving NetCDF files: ru34-20220520T1538 [Line 85]
Deployment directory: 2022/ru34-20220520T1538
2022-05-21T02:42:55Z:clean_up_dac_netcdfs.sh:INFO:NetCDF output path: /home/coolgroup/slocum/deployments/2022/ru34-20220520T1538/data/out/nc/ngdac-profile/rt [Line 76]
2022-05-21T02:42:55Z:clean_up_dac_netcdfs.sh:INFO:Archiving NetCDF files... [Line 87]
tar: Removing leading `/' from member names
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2022-05-21T02:42:56Z:clean_up_dac_netcdfs.sh:INFO:Removing archived NetCDF files... [Line 91]