2022-05-21T02:41:14Z:proc_rutgers_gliders_to_dac.sh:INFO:Processing user-specified deployments [Line 55]
2022-05-21T02:41:14Z:proc_rutgers_gliders_to_dac.sh:INFO:Active deployment: ru28-20220520T1425 [Line 61]
2022-05-21T02:41:14Z:proc_rutgers_gliders_to_dac.sh:INFO:Processing ALL available files for deployments: [Line 66]
2022-05-21T02:41:14Z:proc_rutgers_gliders_to_dac.sh:INFO:ru28-20220520T1425 [Line 69]
2022-05-21T02:41:15Z:batch_process_to_dac.sh:INFO:Processing user-specified deployments [Line 76]
2022-05-21T02:41:15Z:batch_process_to_dac.sh:INFO:Processing the following deployments: [Line 80]
2022-05-21T02:41:15Z:batch_process_to_dac.sh:INFO:ru28-20220520T1425 [Line 83]
Deployment directory: 2022/ru28-20220520T1425
2022-05-21T02:41:15Z:batch_process_to_dac.sh:INFO:sbd path: /home/coolgroup/slocum/deployments/2022/ru28-20220520T1425/data/in/ascii/sbd [Line 130]
2022-05-21T02:41:15Z:batch_process_to_dac.sh:INFO:sbd queue path: /home/coolgroup/slocum/deployments/2022/ru28-20220520T1425/data/in/ascii/queue [Line 136]
2022-05-21T02:41:15Z:batch_process_to_dac.sh:INFO:NetCDF configuration path: /home/coolgroup/slocum/deployments/2022/ru28-20220520T1425/config/ngdac-profile [Line 143]
2022-05-21T02:41:15Z:batch_process_to_dac.sh:INFO:NetCDF output path: /home/coolgroup/slocum/deployments/2022/ru28-20220520T1425/data/out/nc/ngdac-profile/rt [Line 167]
2022-05-21T02:41:15Z:batch_process_to_dac.sh:INFO:Log path: /home/coolgroup/slocum/deployments/2022/ru28-20220520T1425/proc-logs [Line 175]
2022-05-21T02:41:15Z:batch_process_to_dac.sh:INFO:Processing all sbd files... [Line 184]
2022-05-21T02:41:15Z:batch_process_to_dac.sh:INFO:NetCDF processing logged to: /home/coolgroup/slocum/deployments/2022/ru28-20220520T1425/proc-logs/ru28-20220520T1425-ngdac-profiles.log [Line 203]
2022-05-20 22:41:23,301:dba_to_profile_nc:INFO:Writing science NetCDF files [line 67]
/home/kerfoot/code/gncutils/gncutils/yo/__init__.py:128: RuntimeWarning: invalid value encountered in less_equal
  est_data[np.any(est_data <= 0, axis=1), :] = float('nan')
2022-05-20 22:41:23,368:slocum:WARNING:Alternate CTD sensors not found in /home/coolgroup/slocum/deployments/2022/ru28-20220520T1425/data/in/ascii/queue/ru28_2022_139_2_0_sbd.dat [line 492]
2022-05-20 22:41:23,371:ProfileNetCDFWriter:INFO:ru28_2022_139_2_0_sbd.dat 2 profiles indexed [line 198]
/home/kerfoot/code/gncutils/gncutils/yo/__init__.py:128: RuntimeWarning: invalid value encountered in less_equal
  est_data[np.any(est_data <= 0, axis=1), :] = float('nan')
2022-05-20 22:41:25,285:slocum:WARNING:Alternate CTD sensors not found in /home/coolgroup/slocum/deployments/2022/ru28-20220520T1425/data/in/ascii/queue/ru28_2022_139_3_0_sbd.dat [line 492]
2022-05-20 22:41:25,299:ProfileNetCDFWriter:INFO:ru28_2022_139_3_0_sbd.dat 20 profiles indexed [line 198]
/home/kerfoot/code/gncutils/gncutils/yo/__init__.py:128: RuntimeWarning: invalid value encountered in less_equal
  est_data[np.any(est_data <= 0, axis=1), :] = float('nan')
2022-05-20 22:41:39,891:__init__:WARNING:Not enough timestamps for yo interpolation [line 141]
2022-05-20 22:41:39,964:slocum:WARNING:Required CTD sensors not found in /home/coolgroup/slocum/deployments/2022/ru28-20220520T1425/data/in/ascii/queue/ru28_2022_139_3_2_sbd.dat [line 430]
2022-05-20 22:41:39,967:ProfileNetCDFWriter:INFO:ru28_2022_139_3_2_sbd.dat 2 profiles indexed [line 198]
/home/kerfoot/code/gncutils/gncutils/yo/__init__.py:128: RuntimeWarning: invalid value encountered in less_equal
  est_data[np.any(est_data <= 0, axis=1), :] = float('nan')
2022-05-20 22:41:41,779:slocum:WARNING:Alternate CTD sensors not found in /home/coolgroup/slocum/deployments/2022/ru28-20220520T1425/data/in/ascii/queue/ru28_2022_139_3_3_sbd.dat [line 492]
2022-05-20 22:41:41,794:ProfileNetCDFWriter:INFO:ru28_2022_139_3_3_sbd.dat 20 profiles indexed [line 198]
/home/kerfoot/code/gncutils/gncutils/yo/__init__.py:128: RuntimeWarning: invalid value encountered in less_equal
  est_data[np.any(est_data <= 0, axis=1), :] = float('nan')
2022-05-20 22:41:57,445:slocum:WARNING:Alternate CTD sensors not found in /home/coolgroup/slocum/deployments/2022/ru28-20220520T1425/data/in/ascii/queue/ru28_2022_139_3_4_sbd.dat [line 492]
2022-05-20 22:41:57,454:ProfileNetCDFWriter:INFO:ru28_2022_139_3_4_sbd.dat 24 profiles indexed [line 198]
/home/kerfoot/code/gncutils/gncutils/yo/__init__.py:128: RuntimeWarning: invalid value encountered in less_equal
  est_data[np.any(est_data <= 0, axis=1), :] = float('nan')
2022-05-20 22:42:11,420:slocum:WARNING:Alternate CTD sensors not found in /home/coolgroup/slocum/deployments/2022/ru28-20220520T1425/data/in/ascii/queue/ru28_2022_139_3_6_sbd.dat [line 492]
2022-05-20 22:42:11,427:ProfileNetCDFWriter:INFO:ru28_2022_139_3_6_sbd.dat 18 profiles indexed [line 198]
2022-05-20 22:42:20,608:dba_to_profile_nc:INFO:86 NetCDF files written: /home/coolgroup/slocum/deployments/2022/ru28-20220520T1425/data/out/nc/ngdac-profile/rt [line 104]
/home/coolgroup/slocum/deployments/2022/ru28-20220520T1425/data/out/nc/ngdac-profile/rt/ru28_20220520T143205Z_rt.nc
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2022-05-21T02:42:20Z:batch_process_to_dac.sh:INFO:Cleaning up sbd queue path... [Line 214]
2022-05-21T02:42:21Z:ftp_deployment_ncfiles_to_dac.sh:INFO:Processing user-specified deployments [Line 77]
2022-05-21T02:42:21Z:ftp_deployment_ncfiles_to_dac.sh:INFO:Processing the following deployments: [Line 81]
2022-05-21T02:42:21Z:ftp_deployment_ncfiles_to_dac.sh:INFO:ru28-20220520T1425 [Line 84]
Deployment directory: 2022/ru28-20220520T1425
2022-05-21T02:42:22Z:ftp_deployment_ncfiles_to_dac.sh:INFO:NetCDF output path: /home/coolgroup/slocum/deployments/2022/ru28-20220520T1425/data/out/nc/ngdac-profile/rt [Line 120]
2022-05-21T02:42:22Z:ftp_deployment_ncfiles_to_dac.sh:INFO:Log path: /home/coolgroup/slocum/deployments/2022/ru28-20220520T1425/proc-logs [Line 127]
2022-05-21T02:42:22Z:ftp_deployment_ncfiles_to_dac.sh:INFO:Uploading NetCDF files... [Line 147]
/home/kerfoot/code/project-scripts/rucool/ftp_deployment_ncfiles_to_dac.sh: line 152: ftp_nc_to_dac.py: command not found
2022-05-21T02:42:22Z:proc_rutgers_gliders_to_dac.sh:INFO:Archiving NetCDF files: ru28-20220520T1425 [Line 85]
Deployment directory: 2022/ru28-20220520T1425
2022-05-21T02:42:23Z:clean_up_dac_netcdfs.sh:INFO:NetCDF output path: /home/coolgroup/slocum/deployments/2022/ru28-20220520T1425/data/out/nc/ngdac-profile/rt [Line 76]
2022-05-21T02:42:23Z:clean_up_dac_netcdfs.sh:INFO:Archiving NetCDF files... [Line 87]
tar: Removing leading `/' from member names
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2022-05-21T02:42:23Z:clean_up_dac_netcdfs.sh:INFO:Removing archived NetCDF files... [Line 91]