2018-10-12T11:38:45Z:process_deployments.sh:INFO:ERDDAP flags path: /home/coolgroup/slocum/erddap-flags [Line 126]
2018-10-12T11:38:46Z:process_deployments.sh:INFO:Activating conda environment: gncutils [Line 161]
2018-10-12T11:38:46Z:process_deployments.sh:INFO:Processing deployment: silbo18-20180525T1016 [Line 177]
2018-10-12T11:38:46Z:process_deployments.sh:INFO:Deployment path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [Line 181]
2018-10-12 07:38:49,529:proc_deployment_profiles_to_nc:INFO:Checking deployment silbo18-20180525T1016 [line 47]
2018-10-12 07:38:49,530:proc_deployment_profiles_to_nc:INFO:Deployment location: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [line 66]
2018-10-12 07:38:49,530:proc_deployment_profiles_to_nc:INFO:DBA source file path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd [line 78]
2018-10-12 07:38:49,540:proc_deployment_profiles_to_nc:INFO:NetCDF destination: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/out/nc/profile/rt [line 85]
2018-10-12 07:38:49,542:proc_deployment_profiles_to_nc:WARNING:silbo18-20180525T1016 configuration directory not found: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/config/profile [line 96]
2018-10-12T11:38:49Z:process_deployments.sh:INFO:De-activating conda environment: gncutils [Line 232]
2018-10-14T00:59:36Z:process_deployments.sh:INFO:ERDDAP flags path: /home/coolgroup/slocum/erddap-flags [Line 124]
2018-10-14T00:59:37Z:process_deployments.sh:INFO:Activating conda environment: gncutils [Line 159]
2018-10-14T00:59:38Z:process_deployments.sh:INFO:Processing deployment: silbo18-20180525T1016 [Line 175]
2018-10-14T00:59:38Z:process_deployments.sh:INFO:Deployment path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [Line 179]
2018-10-13 20:59:38,880:proc_deployment_profiles_to_nc:INFO:Checking deployment silbo18-20180525T1016 [line 47]
2018-10-13 20:59:38,881:proc_deployment_profiles_to_nc:INFO:Deployment location: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [line 66]
2018-10-13 20:59:38,881:proc_deployment_profiles_to_nc:INFO:DBA source file path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd [line 78]
2018-10-13 20:59:38,881:proc_deployment_profiles_to_nc:INFO:NetCDF destination: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/out/nc/profile/rt [line 85]
2018-10-13 20:59:38,936:proc_deployment_profiles_to_nc:INFO:Found 7 files to process for deployment silbo18-20180525T1016 [line 117]
2018-10-13 20:59:38,971:proc_deployment_profiles_to_nc:INFO:Calculating depth values from pressure & latitude [line 133]
2018-10-13 20:59:38,972:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_16_sbd.dat [line 34]
/home/kerfoot/code/gncutils/gncutils/yo/__init__.py:128: RuntimeWarning: invalid value encountered in less_equal
  est_data[np.any(est_data <= 0, axis=1), :] = float('nan')
2018-10-13 20:59:39,009:ProfileNetCDFWriter:INFO:0 profiles indexed [line 52]
2018-10-13 20:59:39,009:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_17_sbd.dat [line 34]
2018-10-13 20:59:39,049:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-13 20:59:39,050:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_18_sbd.dat [line 34]
2018-10-13 20:59:39,084:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-13 20:59:39,085:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_19_sbd.dat [line 34]
2018-10-13 20:59:39,087:ProfileNetCDFWriter:INFO:0 profiles indexed [line 52]
2018-10-13 20:59:39,087:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_20_sbd.dat [line 34]
2018-10-13 20:59:39,119:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-13 20:59:39,120:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_21_sbd.dat [line 34]
2018-10-13 20:59:39,123:ProfileNetCDFWriter:INFO:0 profiles indexed [line 52]
2018-10-13 20:59:39,123:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_22_sbd.dat [line 34]
2018-10-13 20:59:39,166:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-13 20:59:39,167:proc_deployment_profiles_to_nc:INFO:0 profile NetCDF files created [line 137]
2018-10-14T00:59:39Z:process_deployments.sh:INFO:De-activating conda environment: gncutils [Line 226]
2018-10-14T12:58:03Z:process_deployments.sh:INFO:ERDDAP flags path: /home/coolgroup/slocum/erddap-flags [Line 124]
2018-10-14T12:58:04Z:process_deployments.sh:INFO:Activating conda environment: gncutils [Line 159]
2018-10-14T12:58:04Z:process_deployments.sh:INFO:Processing deployment: silbo18-20180525T1016 [Line 175]
2018-10-14T12:58:04Z:process_deployments.sh:INFO:Deployment path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [Line 179]
2018-10-14 08:58:05,023:proc_deployment_profiles_to_nc:INFO:Checking deployment silbo18-20180525T1016 [line 47]
2018-10-14 08:58:05,024:proc_deployment_profiles_to_nc:INFO:Deployment location: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [line 66]
2018-10-14 08:58:05,024:proc_deployment_profiles_to_nc:INFO:DBA source file path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd [line 78]
2018-10-14 08:58:05,024:proc_deployment_profiles_to_nc:INFO:NetCDF destination: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/out/nc/profile/rt [line 85]
2018-10-14 08:58:05,080:proc_deployment_profiles_to_nc:INFO:Found 5 files to process for deployment silbo18-20180525T1016 [line 117]
2018-10-14 08:58:05,119:proc_deployment_profiles_to_nc:INFO:Calculating depth values from pressure & latitude [line 133]
2018-10-14 08:58:05,121:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_23_sbd.dat [line 34]
/home/kerfoot/code/gncutils/gncutils/yo/__init__.py:128: RuntimeWarning: invalid value encountered in less_equal
  est_data[np.any(est_data <= 0, axis=1), :] = float('nan')
2018-10-14 08:58:05,162:ProfileNetCDFWriter:INFO:0 profiles indexed [line 52]
2018-10-14 08:58:05,162:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_24_sbd.dat [line 34]
2018-10-14 08:58:05,205:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-14 08:58:05,341:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_25_sbd.dat [line 34]
2018-10-14 08:58:05,390:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-14 08:58:05,528:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_26_sbd.dat [line 34]
2018-10-14 08:58:05,531:ProfileNetCDFWriter:INFO:0 profiles indexed [line 52]
2018-10-14 08:58:05,531:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_27_sbd.dat [line 34]
2018-10-14 08:58:05,565:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-14 08:58:05,700:proc_deployment_profiles_to_nc:INFO:3 profile NetCDF files created [line 137]
silbo18-20180525T1016
2018-10-14T12:58:05Z:process_deployments.sh:INFO:Creating ERDDAP dataset reload flag: /home/coolgroup/slocum/erddap-flags/silbo18-20180525T1016-profile-rt [Line 221]
2018-10-14T12:58:05Z:process_deployments.sh:INFO:De-activating conda environment: gncutils [Line 226]
2018-10-15T02:29:52Z:process_deployments.sh:INFO:ERDDAP flags path: /home/coolgroup/slocum/erddap-flags [Line 124]
2018-10-15T02:29:53Z:process_deployments.sh:INFO:Activating conda environment: gncutils [Line 159]
2018-10-15T02:29:53Z:process_deployments.sh:INFO:Processing deployment: silbo18-20180525T1016 [Line 175]
2018-10-15T02:29:53Z:process_deployments.sh:INFO:Deployment path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [Line 179]
2018-10-14 22:29:54,186:proc_deployment_profiles_to_nc:INFO:Checking deployment silbo18-20180525T1016 [line 47]
2018-10-14 22:29:54,187:proc_deployment_profiles_to_nc:INFO:Deployment location: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [line 66]
2018-10-14 22:29:54,187:proc_deployment_profiles_to_nc:INFO:DBA source file path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd [line 78]
2018-10-14 22:29:54,187:proc_deployment_profiles_to_nc:INFO:NetCDF destination: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/out/nc/profile/rt [line 85]
2018-10-14 22:29:54,247:proc_deployment_profiles_to_nc:INFO:Found 7 files to process for deployment silbo18-20180525T1016 [line 117]
2018-10-14 22:29:54,285:proc_deployment_profiles_to_nc:INFO:Calculating depth values from pressure & latitude [line 133]
2018-10-14 22:29:54,286:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_23_sbd.dat [line 34]
/home/kerfoot/code/gncutils/gncutils/yo/__init__.py:128: RuntimeWarning: invalid value encountered in less_equal
  est_data[np.any(est_data <= 0, axis=1), :] = float('nan')
2018-10-14 22:29:54,326:ProfileNetCDFWriter:INFO:0 profiles indexed [line 52]
2018-10-14 22:29:54,326:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_24_sbd.dat [line 34]
2018-10-14 22:29:54,368:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-14 22:29:54,370:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_25_sbd.dat [line 34]
2018-10-14 22:29:54,417:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-14 22:29:54,418:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_26_sbd.dat [line 34]
2018-10-14 22:29:54,420:ProfileNetCDFWriter:INFO:0 profiles indexed [line 52]
2018-10-14 22:29:54,420:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_27_sbd.dat [line 34]
2018-10-14 22:29:54,452:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-14 22:29:54,454:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_28_sbd.dat [line 34]
2018-10-14 22:29:54,456:ProfileNetCDFWriter:INFO:0 profiles indexed [line 52]
2018-10-14 22:29:54,457:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_29_sbd.dat [line 34]
2018-10-14 22:29:54,501:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-14 22:29:54,636:proc_deployment_profiles_to_nc:INFO:1 profile NetCDF files created [line 137]
silbo18-20180525T1016
2018-10-15T02:29:54Z:process_deployments.sh:INFO:Creating ERDDAP dataset reload flag: /home/coolgroup/slocum/erddap-flags/silbo18-20180525T1016-profile-rt [Line 221]
2018-10-15T02:29:54Z:process_deployments.sh:INFO:De-activating conda environment: gncutils [Line 226]
2018-10-15T11:56:07Z:process_deployments.sh:INFO:ERDDAP flags path: /home/coolgroup/slocum/erddap-flags [Line 124]
2018-10-15T11:56:08Z:process_deployments.sh:INFO:Activating conda environment: gncutils [Line 159]
2018-10-15T11:56:08Z:process_deployments.sh:INFO:Processing deployment: silbo18-20180525T1016 [Line 175]
2018-10-15T11:56:08Z:process_deployments.sh:INFO:Deployment path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [Line 179]
2018-10-15 07:56:09,682:proc_deployment_profiles_to_nc:INFO:Checking deployment silbo18-20180525T1016 [line 47]
2018-10-15 07:56:09,683:proc_deployment_profiles_to_nc:INFO:Deployment location: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [line 66]
2018-10-15 07:56:09,683:proc_deployment_profiles_to_nc:INFO:DBA source file path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd [line 78]
2018-10-15 07:56:09,683:proc_deployment_profiles_to_nc:INFO:NetCDF destination: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/out/nc/profile/rt [line 85]
2018-10-15 07:56:09,753:proc_deployment_profiles_to_nc:INFO:Found 4 files to process for deployment silbo18-20180525T1016 [line 117]
2018-10-15 07:56:09,792:proc_deployment_profiles_to_nc:INFO:Calculating depth values from pressure & latitude [line 133]
2018-10-15 07:56:09,793:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_26_sbd.dat [line 34]
/home/kerfoot/code/gncutils/gncutils/yo/__init__.py:128: RuntimeWarning: invalid value encountered in less_equal
  est_data[np.any(est_data <= 0, axis=1), :] = float('nan')
2018-10-15 07:56:09,833:ProfileNetCDFWriter:INFO:0 profiles indexed [line 52]
2018-10-15 07:56:09,833:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_27_sbd.dat [line 34]
2018-10-15 07:56:09,865:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-15 07:56:09,866:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_28_sbd.dat [line 34]
2018-10-15 07:56:09,869:ProfileNetCDFWriter:INFO:0 profiles indexed [line 52]
2018-10-15 07:56:09,869:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_29_sbd.dat [line 34]
2018-10-15 07:56:09,910:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-15 07:56:09,911:proc_deployment_profiles_to_nc:INFO:0 profile NetCDF files created [line 137]
2018-10-15T11:56:09Z:process_deployments.sh:INFO:De-activating conda environment: gncutils [Line 226]
2018-10-16T10:44:17Z:process_deployments.sh:INFO:ERDDAP flags path: /home/coolgroup/slocum/erddap-flags [Line 124]
2018-10-16T10:44:18Z:process_deployments.sh:INFO:Activating conda environment: gncutils [Line 159]
2018-10-16T10:44:18Z:process_deployments.sh:INFO:Processing deployment: silbo18-20180525T1016 [Line 175]
2018-10-16T10:44:18Z:process_deployments.sh:INFO:Deployment path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [Line 179]
2018-10-16 06:44:19,698:proc_deployment_profiles_to_nc:INFO:Checking deployment silbo18-20180525T1016 [line 47]
2018-10-16 06:44:19,698:proc_deployment_profiles_to_nc:INFO:Deployment location: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [line 66]
2018-10-16 06:44:19,698:proc_deployment_profiles_to_nc:INFO:DBA source file path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd [line 78]
2018-10-16 06:44:19,699:proc_deployment_profiles_to_nc:INFO:NetCDF destination: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/out/nc/profile/rt [line 85]
2018-10-16 06:44:19,765:proc_deployment_profiles_to_nc:INFO:Found 4 files to process for deployment silbo18-20180525T1016 [line 117]
2018-10-16 06:44:19,803:proc_deployment_profiles_to_nc:INFO:Calculating depth values from pressure & latitude [line 133]
2018-10-16 06:44:19,804:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_30_sbd.dat [line 34]
/home/kerfoot/code/gncutils/gncutils/yo/__init__.py:128: RuntimeWarning: invalid value encountered in less_equal
  est_data[np.any(est_data <= 0, axis=1), :] = float('nan')
2018-10-16 06:44:19,842:ProfileNetCDFWriter:INFO:0 profiles indexed [line 52]
2018-10-16 06:44:19,842:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_31_sbd.dat [line 34]
2018-10-16 06:44:19,887:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-16 06:44:20,018:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_32_sbd.dat [line 34]
2018-10-16 06:44:20,020:ProfileNetCDFWriter:INFO:0 profiles indexed [line 52]
2018-10-16 06:44:20,021:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_33_sbd.dat [line 34]
2018-10-16 06:44:20,071:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-16 06:44:20,198:proc_deployment_profiles_to_nc:INFO:2 profile NetCDF files created [line 137]
silbo18-20180525T1016
2018-10-16T10:44:20Z:process_deployments.sh:INFO:Creating ERDDAP dataset reload flag: /home/coolgroup/slocum/erddap-flags/silbo18-20180525T1016-profile-rt [Line 221]
2018-10-16T10:44:20Z:process_deployments.sh:INFO:De-activating conda environment: gncutils [Line 226]
2018-10-16T21:27:21Z:process_deployments.sh:INFO:ERDDAP flags path: /home/coolgroup/slocum/erddap-flags [Line 124]
2018-10-16T21:27:22Z:process_deployments.sh:INFO:Activating conda environment: gncutils [Line 159]
2018-10-16T21:27:22Z:process_deployments.sh:INFO:Processing deployment: silbo18-20180525T1016 [Line 175]
2018-10-16T21:27:22Z:process_deployments.sh:INFO:Deployment path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [Line 179]
2018-10-16 17:27:23,292:proc_deployment_profiles_to_nc:INFO:Checking deployment silbo18-20180525T1016 [line 47]
2018-10-16 17:27:23,293:proc_deployment_profiles_to_nc:INFO:Deployment location: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [line 66]
2018-10-16 17:27:23,293:proc_deployment_profiles_to_nc:INFO:DBA source file path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd [line 78]
2018-10-16 17:27:23,293:proc_deployment_profiles_to_nc:INFO:NetCDF destination: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/out/nc/profile/rt [line 85]
2018-10-16 17:27:23,372:proc_deployment_profiles_to_nc:INFO:Found 4 files to process for deployment silbo18-20180525T1016 [line 117]
2018-10-16 17:27:23,416:proc_deployment_profiles_to_nc:INFO:Calculating depth values from pressure & latitude [line 133]
2018-10-16 17:27:23,418:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_32_sbd.dat [line 34]
/home/kerfoot/code/gncutils/gncutils/yo/__init__.py:128: RuntimeWarning: invalid value encountered in less_equal
  est_data[np.any(est_data <= 0, axis=1), :] = float('nan')
2018-10-16 17:27:23,463:ProfileNetCDFWriter:INFO:0 profiles indexed [line 52]
2018-10-16 17:27:23,463:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_33_sbd.dat [line 34]
2018-10-16 17:27:23,514:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-16 17:27:23,516:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_34_sbd.dat [line 34]
2018-10-16 17:27:23,519:ProfileNetCDFWriter:INFO:0 profiles indexed [line 52]
2018-10-16 17:27:23,519:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_35_sbd.dat [line 34]
2018-10-16 17:27:23,575:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-16 17:27:23,714:proc_deployment_profiles_to_nc:INFO:1 profile NetCDF files created [line 137]
silbo18-20180525T1016
2018-10-16T21:27:23Z:process_deployments.sh:INFO:Creating ERDDAP dataset reload flag: /home/coolgroup/slocum/erddap-flags/silbo18-20180525T1016-profile-rt [Line 221]
2018-10-16T21:27:23Z:process_deployments.sh:INFO:De-activating conda environment: gncutils [Line 226]
2018-10-17T10:58:03Z:process_deployments.sh:INFO:ERDDAP flags path: /home/coolgroup/slocum/erddap-flags [Line 124]
2018-10-17T10:58:04Z:process_deployments.sh:INFO:Activating conda environment: gncutils [Line 159]
2018-10-17T10:58:04Z:process_deployments.sh:INFO:Processing deployment: silbo18-20180525T1016 [Line 175]
2018-10-17T10:58:04Z:process_deployments.sh:INFO:Deployment path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [Line 179]
2018-10-17 06:58:05,290:proc_deployment_profiles_to_nc:INFO:Checking deployment silbo18-20180525T1016 [line 47]
2018-10-17 06:58:05,291:proc_deployment_profiles_to_nc:INFO:Deployment location: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [line 66]
2018-10-17 06:58:05,291:proc_deployment_profiles_to_nc:INFO:DBA source file path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd [line 78]
2018-10-17 06:58:05,291:proc_deployment_profiles_to_nc:INFO:NetCDF destination: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/out/nc/profile/rt [line 85]
2018-10-17 06:58:05,357:proc_deployment_profiles_to_nc:INFO:Found 4 files to process for deployment silbo18-20180525T1016 [line 117]
2018-10-17 06:58:05,394:proc_deployment_profiles_to_nc:INFO:Calculating depth values from pressure & latitude [line 133]
2018-10-17 06:58:05,396:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_34_sbd.dat [line 34]
/home/kerfoot/code/gncutils/gncutils/yo/__init__.py:128: RuntimeWarning: invalid value encountered in less_equal
  est_data[np.any(est_data <= 0, axis=1), :] = float('nan')
2018-10-17 06:58:05,445:ProfileNetCDFWriter:INFO:0 profiles indexed [line 52]
2018-10-17 06:58:05,445:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_35_sbd.dat [line 34]
2018-10-17 06:58:05,497:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-17 06:58:05,498:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_36_sbd.dat [line 34]
2018-10-17 06:58:05,501:ProfileNetCDFWriter:INFO:0 profiles indexed [line 52]
2018-10-17 06:58:05,501:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_37_sbd.dat [line 34]
2018-10-17 06:58:05,541:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-17 06:58:05,671:proc_deployment_profiles_to_nc:INFO:1 profile NetCDF files created [line 137]
silbo18-20180525T1016
2018-10-17T10:58:05Z:process_deployments.sh:INFO:Creating ERDDAP dataset reload flag: /home/coolgroup/slocum/erddap-flags/silbo18-20180525T1016-profile-rt [Line 221]
2018-10-17T10:58:05Z:process_deployments.sh:INFO:De-activating conda environment: gncutils [Line 226]
2018-10-18T00:28:05Z:process_deployments.sh:INFO:ERDDAP flags path: /home/coolgroup/slocum/erddap-flags [Line 124]
2018-10-18T00:28:06Z:process_deployments.sh:INFO:Activating conda environment: gncutils [Line 159]
2018-10-18T00:28:06Z:process_deployments.sh:INFO:Processing deployment: silbo18-20180525T1016 [Line 175]
2018-10-18T00:28:06Z:process_deployments.sh:INFO:Deployment path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [Line 179]
2018-10-17 20:28:07,580:proc_deployment_profiles_to_nc:INFO:Checking deployment silbo18-20180525T1016 [line 47]
2018-10-17 20:28:07,581:proc_deployment_profiles_to_nc:INFO:Deployment location: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [line 66]
2018-10-17 20:28:07,581:proc_deployment_profiles_to_nc:INFO:DBA source file path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd [line 78]
2018-10-17 20:28:07,581:proc_deployment_profiles_to_nc:INFO:NetCDF destination: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/out/nc/profile/rt [line 85]
2018-10-17 20:28:07,642:proc_deployment_profiles_to_nc:INFO:Found 4 files to process for deployment silbo18-20180525T1016 [line 117]
2018-10-17 20:28:07,681:proc_deployment_profiles_to_nc:INFO:Calculating depth values from pressure & latitude [line 133]
2018-10-17 20:28:07,682:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_36_sbd.dat [line 34]
/home/kerfoot/code/gncutils/gncutils/yo/__init__.py:128: RuntimeWarning: invalid value encountered in less_equal
  est_data[np.any(est_data <= 0, axis=1), :] = float('nan')
2018-10-17 20:28:07,731:ProfileNetCDFWriter:INFO:0 profiles indexed [line 52]
2018-10-17 20:28:07,731:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_37_sbd.dat [line 34]
2018-10-17 20:28:07,775:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-17 20:28:07,776:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_38_sbd.dat [line 34]
2018-10-17 20:28:07,779:ProfileNetCDFWriter:INFO:0 profiles indexed [line 52]
2018-10-17 20:28:07,779:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_39_sbd.dat [line 34]
2018-10-17 20:28:07,822:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-17 20:28:07,961:proc_deployment_profiles_to_nc:INFO:1 profile NetCDF files created [line 137]
silbo18-20180525T1016
2018-10-18T00:28:08Z:process_deployments.sh:INFO:Creating ERDDAP dataset reload flag: /home/coolgroup/slocum/erddap-flags/silbo18-20180525T1016-profile-rt [Line 221]
2018-10-18T00:28:08Z:process_deployments.sh:INFO:De-activating conda environment: gncutils [Line 226]
2018-10-18T13:48:08Z:process_deployments.sh:INFO:ERDDAP flags path: /home/coolgroup/slocum/erddap-flags [Line 124]
2018-10-18T13:48:09Z:process_deployments.sh:INFO:Activating conda environment: gncutils [Line 159]
2018-10-18T13:48:09Z:process_deployments.sh:INFO:Processing deployment: silbo18-20180525T1016 [Line 175]
2018-10-18T13:48:09Z:process_deployments.sh:INFO:Deployment path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [Line 179]
2018-10-18 09:48:10,649:proc_deployment_profiles_to_nc:INFO:Checking deployment silbo18-20180525T1016 [line 47]
2018-10-18 09:48:10,649:proc_deployment_profiles_to_nc:INFO:Deployment location: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [line 66]
2018-10-18 09:48:10,649:proc_deployment_profiles_to_nc:INFO:DBA source file path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd [line 78]
2018-10-18 09:48:10,649:proc_deployment_profiles_to_nc:INFO:NetCDF destination: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/out/nc/profile/rt [line 85]
2018-10-18 09:48:10,718:proc_deployment_profiles_to_nc:INFO:Found 4 files to process for deployment silbo18-20180525T1016 [line 117]
2018-10-18 09:48:10,762:proc_deployment_profiles_to_nc:INFO:Calculating depth values from pressure & latitude [line 133]
2018-10-18 09:48:10,763:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_38_sbd.dat [line 34]
/home/kerfoot/code/gncutils/gncutils/yo/__init__.py:128: RuntimeWarning: invalid value encountered in less_equal
  est_data[np.any(est_data <= 0, axis=1), :] = float('nan')
2018-10-18 09:48:10,811:ProfileNetCDFWriter:INFO:0 profiles indexed [line 52]
2018-10-18 09:48:10,811:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_39_sbd.dat [line 34]
2018-10-18 09:48:10,865:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-18 09:48:10,867:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_40_sbd.dat [line 34]
2018-10-18 09:48:10,870:ProfileNetCDFWriter:INFO:0 profiles indexed [line 52]
2018-10-18 09:48:10,870:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_41_sbd.dat [line 34]
2018-10-18 09:48:10,922:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-18 09:48:11,069:proc_deployment_profiles_to_nc:INFO:1 profile NetCDF files created [line 137]
silbo18-20180525T1016
2018-10-18T13:48:11Z:process_deployments.sh:INFO:Creating ERDDAP dataset reload flag: /home/coolgroup/slocum/erddap-flags/silbo18-20180525T1016-profile-rt [Line 221]
2018-10-18T13:48:11Z:process_deployments.sh:INFO:De-activating conda environment: gncutils [Line 226]
2018-10-19T11:38:35Z:process_deployments.sh:INFO:ERDDAP flags path: /home/coolgroup/slocum/erddap-flags [Line 124]
2018-10-19T11:38:36Z:process_deployments.sh:INFO:Activating conda environment: gncutils [Line 159]
2018-10-19T11:38:36Z:process_deployments.sh:INFO:Processing deployment: silbo18-20180525T1016 [Line 175]
2018-10-19T11:38:36Z:process_deployments.sh:INFO:Deployment path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [Line 179]
2018-10-19 07:38:37,855:proc_deployment_profiles_to_nc:INFO:Checking deployment silbo18-20180525T1016 [line 47]
2018-10-19 07:38:37,856:proc_deployment_profiles_to_nc:INFO:Deployment location: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [line 66]
2018-10-19 07:38:37,856:proc_deployment_profiles_to_nc:INFO:DBA source file path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd [line 78]
2018-10-19 07:38:37,856:proc_deployment_profiles_to_nc:INFO:NetCDF destination: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/out/nc/profile/rt [line 85]
2018-10-19 07:38:37,941:proc_deployment_profiles_to_nc:INFO:Found 4 files to process for deployment silbo18-20180525T1016 [line 117]
2018-10-19 07:38:37,977:proc_deployment_profiles_to_nc:INFO:Calculating depth values from pressure & latitude [line 133]
2018-10-19 07:38:37,979:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_42_sbd.dat [line 34]
/home/kerfoot/code/gncutils/gncutils/yo/__init__.py:128: RuntimeWarning: invalid value encountered in less_equal
  est_data[np.any(est_data <= 0, axis=1), :] = float('nan')
2018-10-19 07:38:38,020:ProfileNetCDFWriter:INFO:0 profiles indexed [line 52]
2018-10-19 07:38:38,020:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_43_sbd.dat [line 34]
2018-10-19 07:38:38,067:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-19 07:38:38,213:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_44_sbd.dat [line 34]
2018-10-19 07:38:38,216:ProfileNetCDFWriter:INFO:0 profiles indexed [line 52]
2018-10-19 07:38:38,216:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_45_sbd.dat [line 34]
2018-10-19 07:38:38,256:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-19 07:38:38,387:proc_deployment_profiles_to_nc:INFO:2 profile NetCDF files created [line 137]
silbo18-20180525T1016
2018-10-19T11:38:38Z:process_deployments.sh:INFO:Creating ERDDAP dataset reload flag: /home/coolgroup/slocum/erddap-flags/silbo18-20180525T1016-profile-rt [Line 221]
2018-10-19T11:38:38Z:process_deployments.sh:INFO:De-activating conda environment: gncutils [Line 226]
2018-10-20T12:53:16Z:process_deployments.sh:INFO:ERDDAP flags path: /home/coolgroup/slocum/erddap-flags [Line 124]
2018-10-20T12:53:17Z:process_deployments.sh:INFO:Activating conda environment: gncutils [Line 159]
2018-10-20T12:53:18Z:process_deployments.sh:INFO:Processing deployment: silbo18-20180525T1016 [Line 175]
2018-10-20T12:53:18Z:process_deployments.sh:INFO:Deployment path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [Line 179]
2018-10-20 08:53:18,938:proc_deployment_profiles_to_nc:INFO:Checking deployment silbo18-20180525T1016 [line 47]
2018-10-20 08:53:18,939:proc_deployment_profiles_to_nc:INFO:Deployment location: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [line 66]
2018-10-20 08:53:18,939:proc_deployment_profiles_to_nc:INFO:DBA source file path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd [line 78]
2018-10-20 08:53:18,939:proc_deployment_profiles_to_nc:INFO:NetCDF destination: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/out/nc/profile/rt [line 85]
2018-10-20 08:53:18,998:proc_deployment_profiles_to_nc:INFO:Found 4 files to process for deployment silbo18-20180525T1016 [line 117]
2018-10-20 08:53:19,040:proc_deployment_profiles_to_nc:INFO:Calculating depth values from pressure & latitude [line 133]
2018-10-20 08:53:19,041:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_46_sbd.dat [line 34]
/home/kerfoot/code/gncutils/gncutils/yo/__init__.py:128: RuntimeWarning: invalid value encountered in less_equal
  est_data[np.any(est_data <= 0, axis=1), :] = float('nan')
2018-10-20 08:53:19,086:ProfileNetCDFWriter:INFO:0 profiles indexed [line 52]
2018-10-20 08:53:19,086:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_47_sbd.dat [line 34]
2018-10-20 08:53:19,129:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-20 08:53:19,270:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_48_sbd.dat [line 34]
2018-10-20 08:53:19,273:ProfileNetCDFWriter:INFO:0 profiles indexed [line 52]
2018-10-20 08:53:19,273:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_49_sbd.dat [line 34]
2018-10-20 08:53:19,321:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-20 08:53:19,462:proc_deployment_profiles_to_nc:INFO:2 profile NetCDF files created [line 137]
silbo18-20180525T1016
2018-10-20T12:53:19Z:process_deployments.sh:INFO:Creating ERDDAP dataset reload flag: /home/coolgroup/slocum/erddap-flags/silbo18-20180525T1016-profile-rt [Line 221]
2018-10-20T12:53:19Z:process_deployments.sh:INFO:De-activating conda environment: gncutils [Line 226]
2018-10-22T11:40:41Z:process_deployments.sh:INFO:ERDDAP flags path: /home/coolgroup/slocum/erddap-flags [Line 124]
2018-10-22T11:40:42Z:process_deployments.sh:INFO:Activating conda environment: gncutils [Line 159]
2018-10-22T11:40:42Z:process_deployments.sh:INFO:Processing deployment: silbo18-20180525T1016 [Line 175]
2018-10-22T11:40:42Z:process_deployments.sh:INFO:Deployment path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [Line 179]
2018-10-22 07:40:43,590:proc_deployment_profiles_to_nc:INFO:Checking deployment silbo18-20180525T1016 [line 47]
2018-10-22 07:40:43,591:proc_deployment_profiles_to_nc:INFO:Deployment location: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [line 66]
2018-10-22 07:40:43,591:proc_deployment_profiles_to_nc:INFO:DBA source file path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd [line 78]
2018-10-22 07:40:43,593:proc_deployment_profiles_to_nc:INFO:NetCDF destination: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/out/nc/profile/rt [line 85]
2018-10-22 07:40:43,771:proc_deployment_profiles_to_nc:INFO:Found 6 files to process for deployment silbo18-20180525T1016 [line 117]
2018-10-22 07:40:43,814:proc_deployment_profiles_to_nc:INFO:Calculating depth values from pressure & latitude [line 133]
2018-10-22 07:40:43,815:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_50_sbd.dat [line 34]
/home/kerfoot/code/gncutils/gncutils/yo/__init__.py:128: RuntimeWarning: invalid value encountered in less_equal
  est_data[np.any(est_data <= 0, axis=1), :] = float('nan')
2018-10-22 07:40:43,877:ProfileNetCDFWriter:INFO:0 profiles indexed [line 52]
2018-10-22 07:40:43,878:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_51_sbd.dat [line 34]
2018-10-22 07:40:43,927:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-22 07:40:44,056:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_52_sbd.dat [line 34]
2018-10-22 07:40:44,059:ProfileNetCDFWriter:INFO:0 profiles indexed [line 52]
2018-10-22 07:40:44,059:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_53_sbd.dat [line 34]
2018-10-22 07:40:44,098:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-22 07:40:44,223:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_54_sbd.dat [line 34]
2018-10-22 07:40:44,226:ProfileNetCDFWriter:INFO:0 profiles indexed [line 52]
2018-10-22 07:40:44,226:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_55_sbd.dat [line 34]
2018-10-22 07:40:44,274:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-22 07:40:44,401:proc_deployment_profiles_to_nc:INFO:3 profile NetCDF files created [line 137]
silbo18-20180525T1016
2018-10-22T11:40:44Z:process_deployments.sh:INFO:Creating ERDDAP dataset reload flag: /home/coolgroup/slocum/erddap-flags/silbo18-20180525T1016-profile-rt [Line 221]
2018-10-22T11:40:44Z:process_deployments.sh:INFO:De-activating conda environment: gncutils [Line 226]
2018-10-23T11:39:14Z:process_deployments.sh:INFO:ERDDAP flags path: /home/coolgroup/slocum/erddap-flags [Line 124]
2018-10-23T11:39:15Z:process_deployments.sh:INFO:Activating conda environment: gncutils [Line 159]
2018-10-23T11:39:15Z:process_deployments.sh:INFO:Processing deployment: silbo18-20180525T1016 [Line 175]
2018-10-23T11:39:15Z:process_deployments.sh:INFO:Deployment path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [Line 179]
2018-10-23 07:39:16,797:proc_deployment_profiles_to_nc:INFO:Checking deployment silbo18-20180525T1016 [line 47]
2018-10-23 07:39:16,798:proc_deployment_profiles_to_nc:INFO:Deployment location: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [line 66]
2018-10-23 07:39:16,798:proc_deployment_profiles_to_nc:INFO:DBA source file path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd [line 78]
2018-10-23 07:39:16,798:proc_deployment_profiles_to_nc:INFO:NetCDF destination: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/out/nc/profile/rt [line 85]
2018-10-23 07:39:16,870:proc_deployment_profiles_to_nc:INFO:Found 4 files to process for deployment silbo18-20180525T1016 [line 117]
2018-10-23 07:39:16,906:proc_deployment_profiles_to_nc:INFO:Calculating depth values from pressure & latitude [line 133]
2018-10-23 07:39:16,907:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_56_sbd.dat [line 34]
/home/kerfoot/code/gncutils/gncutils/yo/__init__.py:128: RuntimeWarning: invalid value encountered in less_equal
  est_data[np.any(est_data <= 0, axis=1), :] = float('nan')
2018-10-23 07:39:16,945:ProfileNetCDFWriter:INFO:0 profiles indexed [line 52]
2018-10-23 07:39:16,945:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_57_sbd.dat [line 34]
2018-10-23 07:39:17,008:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-23 07:39:17,142:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_58_sbd.dat [line 34]
2018-10-23 07:39:17,144:ProfileNetCDFWriter:INFO:0 profiles indexed [line 52]
2018-10-23 07:39:17,145:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_279_0_59_sbd.dat [line 34]
2018-10-23 07:39:17,190:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-23 07:39:17,319:proc_deployment_profiles_to_nc:INFO:2 profile NetCDF files created [line 137]
silbo18-20180525T1016
2018-10-23T11:39:17Z:process_deployments.sh:INFO:Creating ERDDAP dataset reload flag: /home/coolgroup/slocum/erddap-flags/silbo18-20180525T1016-profile-rt [Line 221]
2018-10-23T11:39:17Z:process_deployments.sh:INFO:De-activating conda environment: gncutils [Line 226]
2018-10-25T18:03:56Z:process_deployments.sh:INFO:ERDDAP flags path: /home/coolgroup/slocum/erddap-flags [Line 124]
2018-10-25T18:03:57Z:process_deployments.sh:INFO:Activating conda environment: gncutils [Line 159]
2018-10-25T18:03:57Z:process_deployments.sh:INFO:Processing deployment: silbo18-20180525T1016 [Line 175]
2018-10-25T18:03:57Z:process_deployments.sh:INFO:Deployment path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [Line 179]
2018-10-25 14:03:59,214:proc_deployment_profiles_to_nc:INFO:Checking deployment silbo18-20180525T1016 [line 47]
2018-10-25 14:03:59,215:proc_deployment_profiles_to_nc:INFO:Deployment location: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [line 66]
2018-10-25 14:03:59,215:proc_deployment_profiles_to_nc:INFO:DBA source file path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd [line 78]
2018-10-25 14:03:59,215:proc_deployment_profiles_to_nc:INFO:NetCDF destination: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/out/nc/profile/rt [line 85]
2018-10-25 14:03:59,273:proc_deployment_profiles_to_nc:INFO:Found 2 files to process for deployment silbo18-20180525T1016 [line 117]
2018-10-25 14:03:59,310:proc_deployment_profiles_to_nc:INFO:Calculating depth values from pressure & latitude [line 133]
2018-10-25 14:03:59,312:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_295_0_3_sbd.dat [line 34]
/home/kerfoot/code/gncutils/gncutils/yo/__init__.py:128: RuntimeWarning: invalid value encountered in less_equal
  est_data[np.any(est_data <= 0, axis=1), :] = float('nan')
2018-10-25 14:03:59,379:ProfileNetCDFWriter:INFO:0 profiles indexed [line 52]
2018-10-25 14:03:59,379:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_295_0_4_sbd.dat [line 34]
2018-10-25 14:03:59,421:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-25 14:03:59,554:proc_deployment_profiles_to_nc:INFO:1 profile NetCDF files created [line 137]
silbo18-20180525T1016
2018-10-25T18:03:59Z:process_deployments.sh:INFO:Creating ERDDAP dataset reload flag: /home/coolgroup/slocum/erddap-flags/silbo18-20180525T1016-profile-rt [Line 221]
2018-10-25T18:03:59Z:process_deployments.sh:INFO:De-activating conda environment: gncutils [Line 226]
2018-10-25T18:30:26Z:process_deployments.sh:INFO:ERDDAP flags path: /home/coolgroup/slocum/erddap-flags [Line 124]
2018-10-25T18:30:27Z:process_deployments.sh:INFO:Activating conda environment: gncutils [Line 159]
2018-10-25T18:30:28Z:process_deployments.sh:INFO:Processing deployment: silbo18-20180525T1016 [Line 175]
2018-10-25T18:30:28Z:process_deployments.sh:INFO:Deployment path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [Line 179]
Traceback (most recent call last):
  File "/home/kerfoot/code/glider-proc/scripts/proc_deployment_profiles_to_nc.py", line 7, in <module>
    from dateutil import parser
ModuleNotFoundError: No module named 'dateutil'
2018-10-25T18:30:28Z:process_deployments.sh:INFO:De-activating conda environment: gncutils [Line 226]
2018-10-25T18:32:19Z:process_deployments.sh:INFO:ERDDAP flags path: /home/coolgroup/slocum/erddap-flags [Line 124]
2018-10-25T18:32:20Z:process_deployments.sh:INFO:Activating conda environment: gncutils [Line 159]
2018-10-25T18:32:21Z:process_deployments.sh:INFO:Processing deployment: silbo18-20180525T1016 [Line 175]
2018-10-25T18:32:21Z:process_deployments.sh:INFO:Deployment path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [Line 179]
2018-10-25 14:32:21,838:proc_deployment_profiles_to_nc:INFO:Checking deployment silbo18-20180525T1016 [line 47]
2018-10-25 14:32:21,839:proc_deployment_profiles_to_nc:INFO:Deployment location: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [line 66]
2018-10-25 14:32:21,839:proc_deployment_profiles_to_nc:INFO:DBA source file path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd [line 78]
2018-10-25 14:32:21,840:proc_deployment_profiles_to_nc:INFO:NetCDF destination: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/out/nc/profile/rt [line 85]
2018-10-25 14:32:21,898:proc_deployment_profiles_to_nc:INFO:Found 2 files to process for deployment silbo18-20180525T1016 [line 117]
2018-10-25 14:32:21,935:proc_deployment_profiles_to_nc:INFO:Calculating depth values from pressure & latitude [line 133]
2018-10-25 14:32:21,936:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_295_0_3_sbd.dat [line 34]
/home/kerfoot/code/gncutils/gncutils/yo/__init__.py:128: RuntimeWarning: invalid value encountered in less_equal
  est_data[np.any(est_data <= 0, axis=1), :] = float('nan')
2018-10-25 14:32:21,977:ProfileNetCDFWriter:INFO:0 profiles indexed [line 52]
2018-10-25 14:32:21,977:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_295_0_4_sbd.dat [line 34]
2018-10-25 14:32:22,026:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-25 14:32:22,028:proc_deployment_profiles_to_nc:INFO:0 profile NetCDF files created [line 137]
2018-10-25T18:32:22Z:process_deployments.sh:INFO:De-activating conda environment: gncutils [Line 226]
2018-10-26T11:19:37Z:process_deployments.sh:INFO:ERDDAP flags path: /home/coolgroup/slocum/erddap-flags [Line 124]
2018-10-26T11:19:39Z:process_deployments.sh:INFO:Activating conda environment: gncutils [Line 159]
2018-10-26T11:19:39Z:process_deployments.sh:INFO:Processing deployment: silbo18-20180525T1016 [Line 175]
2018-10-26T11:19:39Z:process_deployments.sh:INFO:Deployment path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [Line 179]
2018-10-26 07:19:40,218:proc_deployment_profiles_to_nc:INFO:Checking deployment silbo18-20180525T1016 [line 47]
2018-10-26 07:19:40,219:proc_deployment_profiles_to_nc:INFO:Deployment location: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [line 66]
2018-10-26 07:19:40,219:proc_deployment_profiles_to_nc:INFO:DBA source file path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd [line 78]
2018-10-26 07:19:40,219:proc_deployment_profiles_to_nc:INFO:NetCDF destination: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/out/nc/profile/rt [line 85]
2018-10-26 07:19:40,306:proc_deployment_profiles_to_nc:INFO:Found 4 files to process for deployment silbo18-20180525T1016 [line 117]
2018-10-26 07:19:40,343:proc_deployment_profiles_to_nc:INFO:Calculating depth values from pressure & latitude [line 133]
2018-10-26 07:19:40,345:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_295_0_5_sbd.dat [line 34]
/home/kerfoot/code/gncutils/gncutils/yo/__init__.py:128: RuntimeWarning: invalid value encountered in less_equal
  est_data[np.any(est_data <= 0, axis=1), :] = float('nan')
2018-10-26 07:19:40,386:ProfileNetCDFWriter:INFO:0 profiles indexed [line 52]
2018-10-26 07:19:40,387:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_295_0_6_sbd.dat [line 34]
2018-10-26 07:19:40,434:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-26 07:19:40,614:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_295_0_7_sbd.dat [line 34]
2018-10-26 07:19:40,617:ProfileNetCDFWriter:INFO:0 profiles indexed [line 52]
2018-10-26 07:19:40,617:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_295_0_8_sbd.dat [line 34]
2018-10-26 07:19:40,687:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-26 07:19:40,825:proc_deployment_profiles_to_nc:INFO:2 profile NetCDF files created [line 137]
silbo18-20180525T1016
2018-10-26T11:19:40Z:process_deployments.sh:INFO:Creating ERDDAP dataset reload flag: /home/coolgroup/slocum/erddap-flags/silbo18-20180525T1016-profile-rt [Line 221]
2018-10-26T11:19:40Z:process_deployments.sh:INFO:De-activating conda environment: gncutils [Line 226]
2018-10-28T19:41:59Z:process_deployments.sh:INFO:ERDDAP flags path: /home/coolgroup/slocum/erddap-flags [Line 124]
2018-10-28T19:42:00Z:process_deployments.sh:INFO:Activating conda environment: gncutils [Line 159]
2018-10-28T19:42:01Z:process_deployments.sh:INFO:Processing deployment: silbo18-20180525T1016 [Line 175]
2018-10-28T19:42:01Z:process_deployments.sh:INFO:Deployment path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [Line 179]
2018-10-28 15:42:02,962:proc_deployment_profiles_to_nc:INFO:Checking deployment silbo18-20180525T1016 [line 47]
2018-10-28 15:42:02,963:proc_deployment_profiles_to_nc:INFO:Deployment location: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [line 66]
2018-10-28 15:42:02,963:proc_deployment_profiles_to_nc:INFO:DBA source file path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd [line 78]
2018-10-28 15:42:02,963:proc_deployment_profiles_to_nc:INFO:NetCDF destination: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/out/nc/profile/rt [line 85]
2018-10-28 15:42:03,169:proc_deployment_profiles_to_nc:INFO:Found 8 files to process for deployment silbo18-20180525T1016 [line 117]
2018-10-28 15:42:03,207:proc_deployment_profiles_to_nc:INFO:Calculating depth values from pressure & latitude [line 133]
2018-10-28 15:42:03,209:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_295_0_10_sbd.dat [line 34]
/home/kerfoot/code/gncutils/gncutils/yo/__init__.py:128: RuntimeWarning: invalid value encountered in less_equal
  est_data[np.any(est_data <= 0, axis=1), :] = float('nan')
2018-10-28 15:42:03,314:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-28 15:42:03,452:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_295_0_11_sbd.dat [line 34]
2018-10-28 15:42:03,455:ProfileNetCDFWriter:INFO:0 profiles indexed [line 52]
2018-10-28 15:42:03,455:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_295_0_12_sbd.dat [line 34]
2018-10-28 15:42:03,496:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-28 15:42:03,632:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_295_0_13_sbd.dat [line 34]
2018-10-28 15:42:03,635:ProfileNetCDFWriter:INFO:0 profiles indexed [line 52]
2018-10-28 15:42:03,635:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_295_0_14_sbd.dat [line 34]
2018-10-28 15:42:03,677:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-28 15:42:03,814:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_295_0_7_sbd.dat [line 34]
2018-10-28 15:42:03,817:ProfileNetCDFWriter:INFO:0 profiles indexed [line 52]
2018-10-28 15:42:03,817:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_295_0_8_sbd.dat [line 34]
2018-10-28 15:42:03,873:ProfileNetCDFWriter:INFO:1 profiles indexed [line 52]
2018-10-28 15:42:03,874:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_295_0_9_sbd.dat [line 34]
2018-10-28 15:42:03,878:ProfileNetCDFWriter:INFO:0 profiles indexed [line 52]
2018-10-28 15:42:03,878:proc_deployment_profiles_to_nc:INFO:3 profile NetCDF files created [line 137]
silbo18-20180525T1016
2018-10-28T19:42:03Z:process_deployments.sh:INFO:Creating ERDDAP dataset reload flag: /home/coolgroup/slocum/erddap-flags/silbo18-20180525T1016-profile-rt [Line 221]
2018-10-28T19:42:03Z:process_deployments.sh:INFO:De-activating conda environment: gncutils [Line 226]
2018-10-30T13:31:51Z:process_deployments.sh:INFO:ERDDAP flags path: /home/coolgroup/slocum/erddap-flags [Line 124]
2018-10-30T13:31:53Z:process_deployments.sh:INFO:Activating conda environment: gncutils [Line 159]
2018-10-30T13:31:53Z:process_deployments.sh:INFO:Processing deployment: silbo18-20180525T1016 [Line 175]
2018-10-30T13:31:53Z:process_deployments.sh:INFO:Deployment path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [Line 179]
2018-10-30 09:31:54,463:proc_deployment_profiles_to_nc:INFO:Checking deployment silbo18-20180525T1016 [line 47]
2018-10-30 09:31:54,463:proc_deployment_profiles_to_nc:INFO:Deployment location: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [line 66]
2018-10-30 09:31:54,464:proc_deployment_profiles_to_nc:INFO:DBA source file path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd [line 78]
2018-10-30 09:31:54,464:proc_deployment_profiles_to_nc:INFO:NetCDF destination: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/out/nc/profile/rt [line 85]
2018-10-30 09:31:54,527:proc_deployment_profiles_to_nc:INFO:Found 10 files to process for deployment silbo18-20180525T1016 [line 117]
2018-10-30 09:31:54,564:proc_deployment_profiles_to_nc:INFO:Calculating depth values from pressure & latitude [line 133]
2018-10-30 09:31:54,565:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_295_0_13_sbd.dat [line 35]
/home/kerfoot/code/gncutils/gncutils/yo/__init__.py:128: RuntimeWarning: invalid value encountered in less_equal
  est_data[np.any(est_data <= 0, axis=1), :] = float('nan')
2018-10-30 09:31:54,610:ProfileNetCDFWriter:INFO:0 profiles indexed [line 53]
2018-10-30 09:31:54,610:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_295_0_14_sbd.dat [line 35]
2018-10-30 09:31:54,651:ProfileNetCDFWriter:INFO:1 profiles indexed [line 53]
2018-10-30 09:31:54,653:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_295_0_15_sbd.dat [line 35]
2018-10-30 09:31:54,656:ProfileNetCDFWriter:INFO:0 profiles indexed [line 53]
2018-10-30 09:31:54,656:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_295_0_16_sbd.dat [line 35]
2018-10-30 09:31:54,704:ProfileNetCDFWriter:INFO:1 profiles indexed [line 53]
2018-10-30 09:31:54,844:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_295_0_17_sbd.dat [line 35]
2018-10-30 09:31:54,896:ProfileNetCDFWriter:INFO:1 profiles indexed [line 53]
2018-10-30 09:31:55,033:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_295_0_18_sbd.dat [line 35]
2018-10-30 09:31:55,035:ProfileNetCDFWriter:INFO:0 profiles indexed [line 53]
2018-10-30 09:31:55,036:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_295_0_19_sbd.dat [line 35]
2018-10-30 09:31:55,076:ProfileNetCDFWriter:INFO:1 profiles indexed [line 53]
2018-10-30 09:31:55,211:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_295_0_20_sbd.dat [line 35]
2018-10-30 09:31:55,213:slocum:WARNING:No pressure sensor found for calculating depth [line 98]
2018-10-30 09:31:55,213:__init__:WARNING:Parsed dba does not contain llat_pressure: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_295_0_20_sbd.dat [line 48]
2018-10-30 09:31:55,213:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_301_0_0_sbd.dat [line 35]
2018-10-30 09:31:55,255:ProfileNetCDFWriter:INFO:1 profiles indexed [line 53]
2018-10-30 09:31:55,389:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_301_0_1_sbd.dat [line 35]
2018-10-30 09:31:55,392:slocum:WARNING:No pressure sensor found for calculating depth [line 98]
2018-10-30 09:31:55,392:__init__:WARNING:Parsed dba does not contain llat_pressure: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_301_0_1_sbd.dat [line 48]
2018-10-30 09:31:55,392:ProfileNetCDFWriter:INFO:1 NetCDFs not clobbered [line 169]
2018-10-30 09:31:55,392:proc_deployment_profiles_to_nc:INFO:4 profile NetCDF files created [line 137]
silbo18-20180525T1016
2018-10-30T13:31:55Z:process_deployments.sh:INFO:Creating ERDDAP dataset reload flag: /home/coolgroup/slocum/erddap-flags/silbo18-20180525T1016-profile-rt [Line 221]
2018-10-30T13:31:55Z:process_deployments.sh:INFO:De-activating conda environment: gncutils [Line 226]
2018-10-31T15:02:03Z:process_deployments.sh:INFO:ERDDAP flags path: /home/coolgroup/slocum/erddap-flags [Line 124]
2018-10-31T15:02:04Z:process_deployments.sh:INFO:Activating conda environment: gncutils [Line 159]
2018-10-31T15:02:04Z:process_deployments.sh:INFO:Processing deployment: silbo18-20180525T1016 [Line 175]
2018-10-31T15:02:04Z:process_deployments.sh:INFO:Deployment path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [Line 179]
2018-10-31 11:02:05,817:proc_deployment_profiles_to_nc:INFO:Checking deployment silbo18-20180525T1016 [line 54]
2018-10-31 11:02:05,817:proc_deployment_profiles_to_nc:INFO:Deployment location: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016 [line 73]
2018-10-31 11:02:05,818:proc_deployment_profiles_to_nc:INFO:DBA source file path: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd [line 84]
2018-10-31 11:02:05,818:proc_deployment_profiles_to_nc:INFO:NetCDF destination: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/out/nc/profile/rt [line 91]
2018-10-31 11:02:05,901:proc_deployment_profiles_to_nc:INFO:Found 3 files to process for deployment silbo18-20180525T1016 [line 127]
2018-10-31 11:02:05,939:proc_deployment_profiles_to_nc:INFO:Calculating depth values from pressure & latitude [line 143]
2018-10-31 11:02:05,939:proc_deployment_profiles_to_nc:INFO:Writing unprocessed NetCDF files [line 147]
2018-10-31 11:02:05,940:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_302_0_0_sbd.dat [line 35]
/home/kerfoot/code/gncutils/gncutils/yo/__init__.py:128: RuntimeWarning: invalid value encountered in less_equal
  est_data[np.any(est_data <= 0, axis=1), :] = float('nan')
2018-10-31 11:02:06,029:ProfileNetCDFWriter:INFO:1 profiles indexed [line 53]
2018-10-31 11:02:06,170:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_302_0_1_sbd.dat [line 35]
2018-10-31 11:02:06,173:ProfileNetCDFWriter:INFO:0 profiles indexed [line 53]
2018-10-31 11:02:06,173:ProfileNetCDFWriter:INFO:Processing dba file: /home/coolgroup/slocum/deployments/2018/silbo18-20180525T1016/data/in/ascii/sbd/silbo18_2018_302_0_2_sbd.dat [line 35]
2018-10-31 11:02:06,221:ProfileNetCDFWriter:INFO:1 profiles indexed [line 53]
2018-10-31 11:02:06,362:ProfileNetCDFWriter:INFO:0 NetCDFs not clobbered [line 169]
2018-10-31 11:02:06,362:proc_deployment_profiles_to_nc:INFO:2 profile NetCDF files created [line 195]
silbo18-20180525T1016
2018-10-31T15:02:06Z:process_deployments.sh:INFO:Creating ERDDAP dataset reload flag: /home/coolgroup/slocum/erddap-flags/silbo18-20180525T1016-profile-rt [Line 221]
2018-10-31T15:02:06Z:process_deployments.sh:INFO:De-activating conda environment: gncutils [Line 226]