Scientific Papers by the COOL Researchers 1998-2002

2002 Publications

Hare, J.A., J.H. Churchull, R.K. Cowen, T. Berger, P. Cornillon, P. Dragos, S.M. Glenn, J. Govoni, T. Lee, 2002. Routes and rates of larval fish transport from the southeastern to the mid-Atlantic North American continental shelf, Limnology and Oceanography, in press.

Keen, T. and S.M. Glenn, 2002. Predicting Bed Scour on the Continental Shelf During Hurricane Andrew, Journal of Waterway, Port, Coastal and Ocean Engineering, in press.

Kohut, Josh T., Scott M. Glenn, Don E. Barrick, 2002. A Multi-system HF Radar Array for the New Jersey Shelf Observing System (NJSOS). Oceanology International 2002.

Schofield, Oscar, Scott Glenn, Robert Chant, Mark A. Moline, Paul Bissett, Dale Haidvogel, and John Wilkins, 2002. The evolution of a nearshore coastal observatory and the establishment of the New Jersey Shelf Observing System. Oceanology International 2002.

Schofield, O., Bergmann, T., Bissett, W. P., Grassle, F., Haidvogel, D., Kohut, J., Moline, M., Glenn, S. 2002. The Long-Term Ecosystem Observatory: An Integrated Coastal Observatory. Journal of Oceanic Engineering. 27(2): 146-154.

Moline, O., Schofield, O., Gryzmski, J. 2002. Impact of dynamic light and nutrient environments on phytoplankton communities in the coastal ocean. In: Modeling Dynamic Systems: Dynamic Modeling for Marine Conservation Ecological Understanding. Lindholm, J. and Ruth, M. (eds) Springer Verlag 144-163.

Styles, R. and S.M. Glenn, 2002. Modeling bottom roughness in the presence of wave-generated ripples, Journal of Geophysical Research, in press.

Chang, G.C., T.D. Dickey, O. Schofield, A.D. Weidemann, E. Boss, M.A. Moline, S.M. Glenn, 2002. Nearshore physical forcing of bio-optical parameters in the New York Bight, Journal of Geophysical Research, in press.

Millie, D. F., Fahnenstiel, G. L., Lohrenz, S. E., Schofield, O. Relating episodic physical and meterological forcing to phytoplankton group dynamics in Southeastern Lake Michigan during the spring isothermal. Journal of Phycology (In Press).

Glenn,S. M., Schofield, O., Chant, R. E., Grassle J. F. (2001). The New Jersey Shelf Observing System. Oceanology (In press)

Moline, M.A., Arnone, R., Bergmann, T., Glenn, S., Oliver, M., Orrico, C., Schofield, O., Tozzi, S. Variability in spectral backscatter estimated from satellites and its relation to in situ measurements in optically complex coastal waters. Journal of International Remote Sensing. (In Press)

**Tozzi, S., Schofield, O., Bergmann, T., Moline, M. A., Arnone, R. Variability in measured and modeled remote sensing reflectance for coastal waters at LEO-15. Journal of International Remote Sensing. (In Press)

Millie, D. F., Schofield, O., Kirkpatrick, G. J., Johnsen, G., Evens, T. J. Using absorbance and fluorescence spectra to discriminate microalgae. European Journal of Phycology (In Press).

Chang G. C., Dickey T. D., Schofield O., Weidemann A. D., Boss, E., Moline, M. A., Glenn. S. M. Nearshore physical forcing of bio-optical parameters in the New York Bight. Journal of Geophysical Research (In Press).

Millie, D. F., Fahnenstiel, G. L., Carrick, H. J., Lohrenz, S. E., Schofield, O. (2001) Spatial variation in Lake Michigan phytoplankton composition during sediment resuspenion events. Verh. Internat. Verein. Limnol. (In Press).

**Blackwell, S., Case, J., Glenn, S. M., Kohut, J., Moline, M. A., Purcell, M., Schofield, O., C. von Alt. A New AUV Platform for Studying Near Shore Bioluminescence Structure In: 12th International Symposium on Bioluminescence and Chemiluminescence. World Scientific Publishing Company, Singapore (In Press).

**Komada, T., Schofield, O., Reimers, C. Fluorescence characteristics of organic matter released from coastal sediments during resuspension. Marine Chemistry. (In Press)

**Bergmann, T., Paerl, H., Pinckney, J., Richardson, T., Schofield, O. Impact of light and nitrogen on the maximum quantum yield of photosystem II for natural phytoplankton populations from the Neuse River, NC. Journal of Plankton Research. (In Press).

Kohut, J. T. and S. M. Glenn. Calibration of HF radar surface current measurements using measured antenna beam patterns. J. Atmos. Ocean. Tech., submitted.

Styles, R., O. Schofield and S.M. Glenn. The relationship between particle size distributions and light scattering at LEO-15, Journal of Geophysical Research, submitted.

Schofield, O., R. Arnone, W.P. Bissett, M. Crowley, M.A. Moline, S. Glenn, Cyclops is dead: Tapping the international constellation of ocean color satellites, Backscatter, submitted.

Schofield, O., T. Bergmann, J. Kohut, S.M. Glenn, W.S. Pegau, E. Boss, C. Davis, W. Snyder, J. Bowles, M. Kappus, B. Arnone, A. Weidemann, W. P. Bissett, M.A. Moline, E. L. Heine, J. Case and C. Herron, Adaptive sampling of a "red river" in the coastal waters using a coastal observatory, EOS, submitted.

2001 Publications

(** PAPER BY STUDENTS AND POST-DOCTORAL RESEARCHERS)

Glenn, Scott M., Oscar M.E. Schofield, Robert J. Chant and J. Frederick Grassle, 2001. The New Jersey Shelf Observing System. Oceanology International Proceeding 2001.

McDonnell, Janice, 2001. Best Practices in Marine Education: Lessons Learned from a National Estuarine Research Reserve. Tony Fedler, ed.

Song, T., D.B. Haidvogel and S.M. Glenn, 2001. Effects of topography variability on the formation of upwelling centers off New Jersey: A simple theoretical model, Journal of Geophysical Research, Vol. 106, No. C5, pp. 9223-9240.

Schofield, O., T. Bergmann, J. Kohut, S. Glenn, 2001. A coastal ocean observatory for studying nearshore coastal processes. Backscatter, 12, 34-37.

Bissett, W.P., O. Schofield, S. Glenn, J.J. Cullen, W. Miller, A. Pluddeman and C. Mobley, 2001. Resolving the impacts and feedbacks of ocean optics on upper ocean ecology, Oceanography, Vol. 14, No. 3, 30-53.

Moline, M. A., E. Heine, J. Case, C. Herren and Schofield O. 2001. Spatial and temporal variability of bioluminescence potential in coastal regions. In: (J. F. Case, P. J. Herring, S. H. D. Haddock, L. J. Kricka and P. E. Stanley eds.) Bioluminescence and Chemiluminescence 2000. World Scientific Publishing Company, Singapore, pp. 123-126.

**Grzymski, J., Orrico, C., Schofield, O. 2001. Monochromatic ultraviolet light induced damage to photosystem II efficiency and carbon fixation in the marine diatom Thalassiosira pseudonanna (3H). Photosynthesis Research. 68: 181-192.

Bissett, P., Schofield, O., Mobley, C. Crowley, M. F., Moline, M. A. 2001. Optical remote sensing techniques in biological oceanography. In: Methods in Marine Microbiology. Paul, J. (ed). Academic Press, London. 30: 519-538.

Evens, T. J., Kirkpatrick, G. J., Millie, D. F., Chapman, D., Schofield, O. 2001. Xanthophyll-cycling and photophysiological regulation of Gymnodinium breve in response to fluctuating natural irradiance. Journal of Plankton Research 23: 1177-1194.

Moline, M. A., Claustre, H., Frazer, T. K., Grzymski, J., Schofield, O. 2001. Potential impact of cryptophyte blooms on carbon flow through higher trophic levels. In Antarctic Communities. Scientific Committee for Antarctic Research (SCAR), Cambridge University Press. 33: 263-271.

2000 Publications

(** PAPER BY STUDENTS AND POST-DOCTORAL RESEARCHERS)

Bergmann, T., O. Schofield, J. Cullen, S. Glenn, M.A. Moline, 2000. Concurrence of inherent optical properties and particulate organic carbon concentrations in the Middle Atlantic Bight: Applications of ocean color imagery in coastal waters Ocean Optics XV 3: 60-67.

Chang, G. C., T.D. Dickey, W.P. Bissett, O. Schofield, 2000. High temporal resolution optical and physical time series data: Coastal Mixing and Optics and LEO-15. Ocean Optics XV 3: 60-67.

Creed, Elizabeth L. and Scott M. Glenn, 2000. Real-time transmission between research vessel and shore command center. OCEANS 2000 MTS/IEEE Conference Proceedings, Providence, RI, Vol. 2, pp. 1153-1157.

Glenn, S.M., T.D. Dickey, B. Parker and W. Boicourt, 2000. Long-term real-time coastal ocean observation networks. Oceanography, 13, 24-34.

Glenn, S.M., W. Boicourt, B. Parker and T.D. Dickey, 2000. Operational observation networks for ports, a large estuary and an open shelf. Oceanography, 13, 12-23.

Glenn, Scott M., J. Frederick Grassle, and Christopher J. von Alt, 2000. A Well-Sampled Ocean; The Leo Approach. Oceanus, 42 (1), pp. 28-30.

Kirkpatrick, G., Millie, D. F., Moline, M. A., Schofield, O. 2000. Absorption-based discrimination of phytoplankton species in naturally mixed populations. Limnology and Oceanography 42: 467-471.

Moline, M. A., Bissett, W. P., Glenn, S., Haidvogel, D., Schofield, O. 2000. An operational multi-scale real-time long-term ecosystem observatory (LEO-15) for the coastal ocean. Ocean Optics XV 3: 60-67.

Moline, M.A., O. Schofield, J. Gryzmski, 2000. Impact of dynamic light and nutrient environments on phytoplankton communities in the coastal ocean. In: Modeling Dynamic Systems: Dynamic Modeling for Marine Conservation Ecological Understanding. Lindholm, J. and Ruth, M. (eds) Springer Verlag (In press).

Schofield, O., T. Bergmann, W.P. Bissett, and M.A. Moline, 2000. Deconvolving phytoplankton community composition absorption from bulk measurements in turbid coastal waters. Ocean Optics XV.

Styles, R., and S.M. Glenn, 2000. Modeling stratified wave-current bottom boundary layers for the continental shelf. Journal of Geophysical Research, 105, No. C10, 119-124, 139

Tozzi, S., O. Schofield, M.A. Moline, T. Bergmann, M. Crowley, R. Arnone, 2000. Variability in measured and modeled remote sensing reflectance and comparison of SeaWiFS and in situ chl a distribution for coastal waters at LEO-15. Ocean Optics XV.

R. Chant, C. Curran, K. Able and S.M. Glenn, 2000. On the advection of winter flounder larvae in the vicinity of a tidal inlet. Estuarine and Coastal Shelf Science, 51, 529-541.

Kohut, J., S.M. Glenn, and D. Barrick, 2000. Multiple HF-Radar system development for a regional Longterm Ecosystem Observatory in the New York Bight. American Meteorological Society: Fifth Symposium on Integrated Observing Systems, pp. 4-7.

Zhang, Yunqing P., John F. Fracassi, John E. Wiggins, Scott M. Glenn and J. F. Grassle, 2000. RODAN: Rutgers Ocean Data Access Network Powered by Java Technologies. American Meteorological Society: Fifth Symposium on Integrated Observing Systems, pp. 21-25.

1999 Publications

(** PAPER BY STUDENTS AND POST-DOCTORAL RESEARCHERS)

Kerkhof, L., M. Voytek, D.F. Mille, R. Sherrell, O. Schofield, 1999. Variability in bacterial community structure during upwelling in the coastal ocean. Hydrobiologia 401: 139-148.

Kirkpatrick, G., O. Schofield, D.F. Millie, M.A. Moline, 1999. Optical discrimination of phytoplankton species in naturally mixed populations. SPIE Ocean Optics XIV 3: 60-67.

Kohut, J.T., S.M. Glenn and D.E. Barrick, 1999. SeaSonde is integral to coastal flow model development. Hydro International, April, 32-35.

Millie, D.F., C.P. Dionigi, O. Schofield, P.A. Tester, 1999. The importance of understanding the molecular, cellular, and ecophysiological bases of harmful algal blooms. Journal of Phycology 35: 1353-1355.

Robinson, A.R., and S.M. Glenn, 1999. Adaptive sampling for ocean forecasting. Naval Research Review, 51, 26-38.

Schofield, O., T. Bergmann, J. Grzymski, S. Glenn, 1999. Spectral fluorescence and inherent optical properties during upwelling events off the coast of New Jersey. SPIE Ocean Optics XIV 3: 60-67.

Schofield, O., J. Gryzmski, W.P. Bissett, G. Kirkpatrick, D.M. Millie, M.A. Moline, and C. Roesler. 1999. Optical monitoring and forecasting systems for harmful algal blooms: Possibility or pipedream? Journal of Phycology. 35: 125-145.

Fahnenstiel, G. L.,S. E. Lohrenz, K. Kelly, D. F. Millie, Schofield, O. 1999. Light absorption characteristics of individual phytoplankton cells from a natural community: Examples from Lake Michigan during the winter period. Verh. Internat. Verein. Limnol. 27: 342-347.

S.M. Glenn , W. Boicourt, T.D. Dickey and B. Parker, 1999. Long-term Real-time Observation networks for Ports, Estuaries and the Open Shelf. Proceedings, Challenges and Promise of Designing and Implementing an Ocean Observing System for U.S. Coastal Waters, Solomons, Maryland.

T.R. Keen and S.M. Glenn, 1999. Shallow water currents during Hurricane Andrew. Journal of Geophysical Research, 104, 23,443-23,458.

1998 Publications

(** PAPER BY STUDENTS AND POST-DOCTORAL RESEARCHERS)

Creed, Elizabeth L., Scott M. Glenn and Robert Chant, 1998. Adaptive sampling experiment at LEO-15. MTS Ocean Community Conference '98 Proceedings, Baltimore, MD, Vol. 1, pp. 576-579.

Crowley, M.F., J. McDonnell, M. Bogdon, S.M. Glenn and M.P. DeLuca, 1998. Using Real Time Satellite and In Situ Data on the Internet to Bring the Ocean to the Precollegiate Classroom. American Meteorological Association, 7th Symposium on Education, Phoenix, Arizona, Jan 11-16, pp. J1-J2.

Grassle, J.F., S.M. Glenn and C. von Alt, 1998. Ocean Observing Systems for Marine Habitats. OCC Proceedings, Sea Technology '98, November, pp. 567-570.

S.M Glenn., D.B. Haidvogel, O.M.E. Schofield, J.F. Grassle, C.J. von Alt, E.R. Levine and D.C. Webb, 1998. Coastal predictive skill experiments at the LEO-15 National Littoral Laboratory. Sea Technology, April pp. 63-69.

McDonnell, Janice, M.F. Crowley, M. Bogdon, M.P. De Luca and S.M. Glenn 1998. The LEO-15 Internet Program: Linking Oceanographic Research and the Pre-Collegiate Classroom. American Meteorological Association, 7th Symposium on Education, Phoenix, Arizona, Jan 11-16, pp. 74-75.

Schofield, O., Grzymski, J., Moline, M. A., Jovine, R. V. M. 1998. Impact of temperature on photosynthesis in the red-tide dinoflagellate Alexandrium fundyense (Ca28). Journal Plankton Research 20(7): 1241-1258.

**Moline, M. A., Schofield, O., Boucher, N. B. 1998. Photosynthetic parameters and empirical modeling of primary production in the Southern ocean. Antarctic Science. 10: 45-54.

Schofield, O., Evens, T. J., Millie, D. F. 1998. Photosystem II quantum yields and xanthophyll-cycle pigments of the macroalga, Sargassum natans (Phaeophyta): Dynamic responses under natural sunlight . Journal of Phycology 34(1): 104-112.

Moline, M. A., B. B. Prézelin, Schofield, O. 1998. Stable interannual successional patterns of phytoplankton communities in the coastal waters off Palmer Station, Antarctica. Antarctic Journal of the United States. 32:151-153.

T.R. Keen and S.M. Glenn, 1998. Factors influencing model skill for hindcasting shallow water currents during Hurricane Andrew, Journal of Atmospheric and Oceanic Technology, 15, 221-236.

T.R. Keen and S.M. Glenn, 1998. Resuspension and advection of sediment during Hurricane Andrew on the Louisiana continental shelf, Fifth International Conference on Estuarine and Coastal Modeling, 481-494.

S.M. Glenn, 1998. Coastal predictive skill experiments at the Long-term Ecosystem Observatory, William D. Grant Symposium Proceedings, 71-74.