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DMCS Academic Publications: 2015 PDF Print E-mail

Stukel, M. R., Asher, E., Couto, N., Schofield, O., Strebel, S., Tortell, P., Ducklow, H. W. The imbalance of new and export production in the Western Antarctic Peninsula, a potentially “leaky” ecosystem . Global Biogeochemical Cycles. Doi:10.1002/2015GB005211 

Zavala-Garay, J., Theiss, J., Moulton, M., Walsh, C., van Woesik, R., Mayorga-Adams, C. G., Garcia-Reyes M., Mukaka, D. S., Whiden, K., Shaghude, Y. W. 2015. On the dynamics of the Zanzibar Channel. Journal of Geophysical Research; Oceans. doi:10.1002/2015JC010879.

McGuinness LR, Wilkins MJ, Williams KH, Long PE, Kerkhof LJ (2015) Identification of Bacteria Synthesizing Ribosomal RNA in Response to Uranium Addition During Biostimulation at the Rifle, CO Integrated Field Research Site. PLoS ONE 10(9): e0137270. doi:10.1371/journal.pone.0137270

Kuzminov, F. I., Gorbunov, M. Y. 2015. Energy dissipation pathways in Photosystem 2 of the diatom Phaeodactylum tricornutum, under high-light conditions . Photsynthesis Research. doi:10.1007/s1120-015-0180-3 

National Research Council (Bell, R. E., Weller, R. A., Bromwich, D. H., Carlstrom, J. E., cheng, C. C., Clauer, R. C., Dorman, C. E., Dunbar, R. R., Marchant, D. R., Parsons, M. A., Pennycook, J., Ravishankara, A. R., Scambos, T. A., Schlesinger, W. H., SchofieldO., Severinghaus, J. P., Takacs-Vesbach, C.) 2015. A strategic vision for NSF investments in Antarctic and Southern Ocean research. Ocean Studies Board, National Research Council. 170 pp.

Brum, J. R., Hurwitz, B. L., Schofield, O., Ducklow, H. W., Sullivan, M. 2015. Seasonal time bombs: dominant temperate viruses affect Southern Ocean microbial dynamics The ISME Journal. doi:10.1038/ismej.2015.125

Kuykendall, K. M., Moreno, P., Powell, E. N., Soniat, T. M., Colley, S., Mann, R., Munroe, D. M. 2015. The Exposed Surface Area to Volume Ratio: Is Shell More Efficient than Limestone in Promoting Oyster Recruitment?  Journal of Shellfish Research 34(2): 217–225. DOI: 10.2983/035.034.0203

Fuchs, H. L., A. J. Christman, G. P. Gerbi, E. J. Hunter and F. J. Diez (2015). Directional flow sensing by passively stable larvae. Journal of Experimental Biology 218: 2782-2792. 

Kennish, M. J. (editor) 2015. Encyclopedia of Estuaries.  Springer, Dordrecht, The Netherlands. 790 pp.  ISBN: 978-94-017-8800-7.

Kennish, M. J. 2015. Anthropogenic impacts. In: Kennish, M. J., ed., Encyclopedia of Estuaries. Springer, Dordrecht, The Netherlands, pp. 29-35.

Kennish, M. J. 2015. Coastal lagoons. In: Kennish, M. J., ed., Encyclopedia of Estuaries. Springer, Dordrecht, The Netherlands, pp. 140-143.

Kennish, M. J. 2015. Eutrophication. In: Kennish, M. J., ed., Encyclopedia of Estuaries. Springer, Dordrecht, The Netherlands, pp. 304-311.

 Kennish, M. J. 2015. Macroalgae. In: Kennish, M. J., ed., Encyclopedia of Estuaries. Springer, Dordrecht, The Netherlands, pp. 387-388.

 Kennish, M. J. 2015. Oil pollution. In: Kennish, M. J., ed., Encyclopedia of Estuaries. Springer, Dordrecht, The Netherlands, pp. 467-468.

 Kennish, M. J. 2015. Sublittoral zone. In: Kennish, M. J., ed., Encyclopedia of Estuaries. Springer, Dordrecht, The Netherlands, pp. 649-650.

 Kennish, M. J. 2015. Clean Water Act. In: Kennish, M. J., ed., Encyclopedia of Estuaries. Springer, Dordrecht, The Netherlands, p. 122.

 Kennish, M. J. 2015. Coastal bays. In: Kennish, M. J., ed., Encyclopedia of Estuaries. Springer, Dordrecht, The Netherlands, p. 130.

 Kennish, M. J. 2015. Foredune. In: Kennish, M. J., ed., Encyclopedia of Estuaries. Springer, Dordrecht, The Netherlands, p. 334.

 Kennish, M. J. 2015. Halogenated hydrocarbons. In: Kennish, M. J., ed., Encyclopedia of Estuaries. Springer, Dordrecht, The Netherlands, p. 350.

 Kennish, M. J. 2015. Littoral zone. In: Kennish, M. J., ed., Encyclopedia of Estuaries. Springer, Dordrecht, The Netherlands, p. 385.

 Kennish, M. J. 2015. Macroalgae blooms. In: Kennish, M. J., ed., Encyclopedia of Estuaries. Springer, Dordrecht, The Netherlands, p. 388.

Kennish, M. J. 2015. Polycyclic aromatic hydrocarbons. In: Kennish, M. J., ed., Encyclopedia of Estuaries. Springer, Dordrecht, The Netherlands, p. 495. 

Bailleul, B., Berne, N., Murik, O., Petroutsos, D., Prihoda, J., Tanaka, A., Villanova, V., Bligny, R., Flori, S., Falconet, D., Krieger-Liszkay, A., Santabarbara, S., Rappaport, F., Joliot, P.,Tirichine, L., Falkowski, P. G., Cardol, P., Bowler, C., Finazzi, G. 2015. Energetic coupling between plastids and mitochondria drives CO2 assimilation in diatoms . Nature. 524. doi:10.1038/nature14599

Kemp, A. C., Hawkes, A. D., Donnelly, J. P., Vane, C. H., Horton, B. P., Hill, T. D., Aniseld, S. C., Parnell A. C. 2015. Relative sea-level change in Connecticut (USA) during the last 2200 yrs. Earth and Planetary Science Letters. 428: 217-229.

Cahill, N., Kemp, A. C., Horton, B. P., Parnell, A. C. 2015. Modeling sea-level change using errors-in-variables integrated gaussian processes . The Annals of Applied Statistics 9(2):547-571. doi: 10.1214/15-AOAS824

Schofield, O., Jones, C., Kohut, J., Kremer, U.,  Miles, T., Saba, G., Webb, D., Glenn, S. 2015. Building a coordinated community fleet of autonomous gliders for sampling coastal systems. Marine Technology Society 49(3): 9-16.

Dungan, C.F. and D. Bushek.  2015.  Development and applications of Ray's fluid thioglycollate media for detection and manipulation of Perkinsus spp. pathogens of marine molluscs.  J. Invert. Pathol.

Powell, E.N., R. Mann, K.A. Ashton-Alcox, Y. Kim and D. Bushek. 2015. The allometry of oysters: spatial and temporal variation in the length–biomass relationships for Crassostrea virginica. Journal of the Marine Biological Association of the United Kingdom, 

Geyer, W.R. and R.J Chant. 2015.  Physics of Estuaries and Coastal Seas 2012, Ocean Dynamics 1-3

Aristizábal, M. F., and R. J. Chant 2015. An observational study of salt fluxes in Delaware Bay, J. Geophys. Res. Oceans, 120, doi:10.1002/2014JC010680. 

Dutton, A., Carlson, A.E., Long, A.J., Milne, G.A., Clark, P.U., DeConto, R., Horton, B.P., Rahmstorf, S. and Raymo, M.E., 2015. Sea-level rise due to polar ice-sheet mass loss during past warm periods. Science, 349, 153 

Nelson, A.R., Briggs, R.W., Dura, T., Engelhart, S.E., Gelfenbaum, G., Bradley, L-A., Forman, S.L., Vane, C.H., and Kelley, K. A., 2015. Tsunami recurrence in the eastern Alaska-Aleutian arc: A Holocene stratigraphic record from Chirikof Island, Alaska. 11, doi:10.1130/GES01108.1.

Kelsey, H.M., Engelhart, S.E., Pilarczyk, J.E., Horton, B.P., Rubin, C.M., Daryono, M.R., Ismail, N., Hawkes, A.D., Bernhardt, C.E. and Cahill, N., 2015. Accommodation space, relative sea level and the archiving of paleoearthquakes along subduction zones. Geology. doi:10.1130/G36706.1.

Khan, N.S., Vane, C.V., Horton, B.P., Hillier, C., Riding, J.B., Kendick, C.P., 2015. The application of δ13C, TOC and C/N geochemistry to reconstruct Holocene relative sea levels and paleoenvironments in the Thames Estuary, UK . Journal of Quaternary Science. DOI: 10.1002/jqs.2784.

Guo, X., Y. He, L. Zhang, C. Lelong and A. Jouaux. 2015. Immune and stress responses in oysters with insights on adaptation. Fish & Shellfish Immunology,

He, Y., A. Jouaux, S.E. Ford, C. Lelong, P. Sourdaine, M. Mathieu and X. Guo. 2015. Transcriptome analysis reveals strong and complex antiviral response in a mollusc. Fish & Shellfish Immunology,

Gómez-Chiarri, M., X. Guo, A. Tanguy, Y. He and D. Proestou. 2015. The use of -omic tools in the study of disease processes in marine bivalve mollusks. Journal of Invertebrate Pathology,

Gómez-Chiarri, M., W.C. Warren, X. Guo and D. Proestou. 2015. Developing tools for the study of molluscan immunity: The sequencing of the genome of the eastern oyster, Crassostrea virginica. Fish & Shellfish Immunology, 

Munroe, D., E. Hofmann, J. Klinck, E. Powell, Ford, SE.  2015. Outcomes of asymmetric selection pressure and larval dispersal on evolution of disease resistance: a metapopulation modeling study with oysters . Marine Ecology Progress Series, 531: 221-239. doi:10.3354/meps11349

Neubauer, P. and O.P. Jensen. Bayesian estimation of predator diet composition from fatty acids and stable isotopes. 2015. PeerJ. 3:e920; DOI 10.7717/peerj.920

Thorson, J.T., O.P. Jensen, and R. Hilborn. 2015. Probability of stochastic depletion: an easily interpreted diagnostic for stock assessment modelling and fisheries management . ICES Journal of Marine Science. 72:428-435  

Pepin, N., R. Bradley, H.Diaz, M. Baraer, E. Caceres, N. Forsythe, H. Fowler, G. Greenwood, M. Hashmi, X. Liu, J. Miller, L. Ning, A. Ohmura, E. Palazzi, I. Rangwala, W. Schoener, I. Severskiy, M. Shahgedanova, M. Wang, S. Williamson, and D. Yang, 2015.  Elevation-dependent warming in mountain regions of the world.  Nature Climate Change, 5, 424-430, DOI:10.1038/NCLIMATE2563.0 

Rangwala, I., E. Sinsky, and J. R. Miller, 2015.  Variability in projected elevation dependent warming in boreal midlatitude winter in CMIP5 climate models and its potential drivers.  Clim. Dyn., DOI 10.1007/s00382-015-2692-0.

R. E. Kopp, B. P. Horton, A. C. Kemp and C. Tebaldi 2015. Past and future sea-level rise along the coast of North Carolina, United States. Climatic Change, doi:10.1007/s10584-015-1451-x. 

R. E. Kopp, C. C. Hay, C. M. Little, and J. X. Mitrovica 2015. Geographic variability of sea-level change. Current Climate Change Reports. doi: 10.1007/s40641-015-0015-5.

Kalansky, J., Rosenthal, Y., Herbert T., Bova, S., Altabet, M. 2015. Southern Ocean contributions to the eastern equatorial Pacific heat content during the Holocene. Earth and Planetary Science Letters. 424: 158-167.

Young, T., Jensen, O. P., Weidel, B. C., Chandra, S. 2015. Natural trophic variability in a large, oligotrophic, near-pristine lake. Journal of Great Lakes Research . 41: 463-472. 

Grosche, A., Sekaran, H., Pérez-Rodríguez, I., Starovoytov, V. and Vetriani, C. 2015. Cetia pacifica gen. nov., sp. nov., a novel chemolithoautotrophic, thermophilic, nitrate-ammonifying bacterium from a deep-sea hydrothermal vent. Intl. J. Syst. Evol. Microbiol. 65:1144-1150. doi:10.1099/ijs.0.000070.

Pérez-Rodríguez, I., Bolognini, M., Ricci, J., Bini, E. and Vetriani, C. 2015. From deep-sea volcanoes to human pathogens: A conserved quorum sensing signal in Epsilonproteobacteria. ISME J. 9:1222-1234. doi:10.1038/ismej.2014.214. 

Falkowski, P. G.  2015. Life's Engines: How microbes made the Earth habitable . Princeton University Press. ISBN: 9781400865727. 224pp.

Norghauer JM, Free CM, Landis RM, Grogan J, Malcolm JR, Thomas SC 2015. Herbivores limit the population size of big-leaf mahogany trees in an Amazonian forestOikos. DOI: 10.1111/oik.02324

Allen, K. A., Sikes, E. L., Barbel, H., Elmore, A. C., Guilderson, T. P., Rosenthal, Y., Anderson, R. F. 2015. Southwest Pacific deep water carbonate chemistry linked to high southern latitude climate and atmospheric CO 2 during the Last Glacial TerminationQuaternary Science Reviews. 122 (2015) 180-191.

Kourafalou V.H., P. De Mey, M. Le Hénaff, G. Charria, C.A. Edwards, R. He, M. Herzfeld, A. Pascual, E.V. Stanev, J. Tintoré, N. Usui, A.J. van der Westhuysen, J. Wilkin & X. Zhu 2015. Coastal Ocean Forecasting: system integration and evaluation, Journal of Operational Oceanography, 8:sup1, s127-s146, DOI:10.1080/1755876X.2015.1022336 

Le Traon P.-Y. , D. Antoine, A. Bentamy, H. Bonekamp, L.A. Breivik, B. Chapron, G. Corlett, G. Dibarboure, P. DiGiacomo, C. Donlon, Y. Faugère, J. Font, F. Girard-Ardhuin, F. Gohin, J.A. Johannessen, M. Kamachi, G. Lagerloef, J. Lambin, G. Larnicol, P. Le Borgne, E. Leuliette, E. Lindstrom, M.J. Martin, E. Maturi, L. Miller, L. Mingsen, R. Morrow, N. Reul, M.H. Rio, H. Roquet, R. Santoleri & J. Wilkin 2015. Use of satellite observations for operational oceanography: recent achievements and future prospects, Journal of Operational Oceanography, 8:sup1, s12-s27, DOI:10.1080/1755876X.2015.1022050 

Reiss, P. Grothues, T. W. 2015. Geometric morphometric analysis of cyclical body shape changes in color pattern variants of Cichla temensis Humboldt, 1821 (Perciformes: Cichlidae) demonstrates reproductive energy allocationNeotropical Ichthyology. 13(1): 103-112. DOI: 10.1590/1982-0224-20140030

Smith, and J. F. Caridad.  2015.  American eel supply to an estuary and its tributaries: Spatial variation in Barnegat Bay, New Jersey. Northeastern Naturalist 22(1): 53-68. 

Turnure, J. T., K. W. Able, and T. M. Grothues. 2015.  Patterns of intra-estuarine movement in adult weakfish (Cynoscion regalis): evidence of site-affinity at seasonal and diel scales.  Fishery Bulletin 113:167-179.

Turnure, J. T., T. M. Grothues, and K. W. Able.  2015. Seasonal residency of adult weakfish (Cynoscion regalis) in a small temperate estuary based on acoustic telemetry: A local perspective of a coast wide phenomenon.  Environmental Biology of Fishes 98:1207-1221.

Jones, K. M.M., and K. W. Able. 2015.  Abundance and diet of predatory fishes in Phragmites, treated Phragmites, and natural Spartina marshes in Delaware Bay. Estuaries and Coasts DOI 10.1007/s12237-014-9883-5.  

Sieh, K., Daly, P., McKinnon, E. E., Pilarczyk, J. E., Chiang, H., Horton, B., Rubin, C. M., Shen, C., Ismail, N., Vane, C. H., Feener, M. R. 2015.  Penultimate predecessors of the 2004 Indian Ocean tsunami in Aceh, Sumatra: Stratigraphic, archeological, and historical evidence Journal Geophysical Research, Solid Earth, 120: 308325, doi:10.1002/2014JB011538 

Cermeno, P., Falkowski, P. G., Romerom O. E., Schaller, M. F., Vallina, S. M. 2015. Continental erosion and the Cenozoic rise of marine diatoms. Proceedings of National Academy of Sciences. 

Hijma, M.P., Engelhart, S.E., Tornqvist, T.E., Horton, B.P., Hu, P. and Hill, D.E. 2015. A protocol for a geological sea-level database. In: Shennan, I., Long, A.J., Horton, B.P. (eds.) The Handbook of Sea-Level Research. John Wiley & Sons: Chichester. 295-311. ISBN: 978-1-118-45258-5.

Khan, N.S., Vane, C.H., Horton, B.P. 2015. Stable carbon isotope and C/N geochemistry of coastal wetland sediments as a sea-level indicator. In: Shennan, I., Long, A.J., Horton, B.P. (eds.) The Handbook of Sea-Level Research. John Wiley & Sons: Chichester. 536-554. ISBN: 978-1-118-45258-5. 

Kavanaugh, M. T., Abdala, F. N., Ducklow, H., Glover, D., Fraser, W., Martinison, D., Stammerjohn, S., Schofield, O., Doney, S. C. 2015. Effect of continental shelf canyons on phytoplankton biomass and community composition along the western Antarctic Peninsula. Marine Ecology Progress Series. 524: 11–26. doi: 10.3354/meps11189

Miles, T. N., Seroka, G., Kohut, J., Schofield, O., Glenn, S. 2015. Glider observations and modeling of sediment transport in Hurricane Sandy. Journal of Geophysical Research 120, doi:10.1002/2014JC010474.

Dura, T., Cisternas, C., Horton, B.P., Ely, L.L., Wesson, R.L., Nelson, A.R. and Pilarczyk, J.E. 2015. Coastal evidence for Holocene subduction zone earthquakes and tsunamis in central Chile. Quaternary Science Reviews, 113, 93-111

Engelhart, S.E., Vacchi, M., Horton, B.P., Nelson, A.R. and Kopp, R.E., 2015. A Sea Level Database for the central Pacific coast of North America. Quaternary Science Reviews, 113, 78-92.

Freymueller, J.T., Haeussler, P.J., Horton, B.P. and Shennan, I., 2015. Megathrust earthquakes and sea-level change: a tribute to George Plafker . Quaternary Science Reviews, 113, 1-2.

Milker, Y., Horton, B.P., Vane, C.H., Engelhart, S.E., Nelson, A.R., Witter, R.C., Khan, N.S. and Bridgeland, W.T. 2015. Seasonal distribution of intertidal foraminifera and stable carbon isotope geochemistry, Bandon Marsh, Oregon, USA . Journal of Foraminiferal Research, 45, 146-166.

Full edited volume: Freymueller, J.T., Haeussler, P.J., Horton, B.P. and Shennan, I., (eds.) 2015. Megathrust earthquakes and sea-level change: A tribute to George Plafker. Quaternary Science Reviews, Volume 113, 1-192. 

Zhang, L., L. Li, X. Guo, G.W. Litman, L.J. Dishaw & G. Zhang. 2015. Massive expansion and functional divergence of innate immune genes in a protostome. Scientific Reports, 5: 8693. 

Zarnoch, C.B., J. N. Kraeuter, B.F. Beal, V. M. Bricelj, G. Flimlin, D. Bushek. 2015. Geographic origin and culture method influence the overwinter mortality of juvenile hard clams, Mercenaria mercenaria (L.). Aquaculture 440: 48-59. 

Allen, K. A. 2015. When carbon escaped from the sea. Nature 518: 176-177. 

National Research Council. 2015. Climate Intervention: Carbon Dioxide Removal and Reliable Sequestration. Washington, DC: The National Academies Press.

National Research Council. 2015. Climate Intervention: Reflecting Sunlight to Cool Earth. Washington, DC: The National Academies Press. 

Harel. A., Karkar, S., Cheng, S., Falkowski, P. G., Bhattacharya, D. 2015. Deciphering primordial cyanobacterial genome functions from protein network analysis. Current Biology. DOI: 

Brew, D. S., Horton, B. J., Evans, G., Innes, J. B., Shennan, I. 2015. Holocene sea-level history and coastal evolution of the north-western Fenland, eastern England. Proceedings of the Geologists' Association. 126: 72-85.   

Brain, M. J., Kemp, A. C., Horton, , B. P., Culver, S. J. 2015. Quantifying the contribution of sediment compaction to late Holocene salt-marsh sea-level reconstructions, North Carolina, USA. Quaternary Research.

Freymueller, J. T., Haeussler, P. J., Horton, B. P., Shennan, I. 2015. Megathrust earthquakes and sea-level change: a tribute to George Plafker. Quaternary Science Reviews. 

Zhang, P., Haidvogel, D., Powell, E., Klinck, J., Mann, R., Castruccio, F., Munroe, D. 2015. A coupled physical and biological model of larval connectivity in Atlantic surfclams along the Middle Atlantic Bight. Part I: Model development and description. Estuarine Coastal and Shelf Science. 153: 38-53. doi:10.1016/j.ecss.2014.11.033

Narváez, D., D. Munroe, E. Hofmann, J. Klinck, E. Powell, R. Mann, and E. Curchitser. 2015. Long-term dynamics in Atlantic surfclam (Spisula solidissima) populations: The role of bottom water temperature. Journal of Marine Systems 141: 136-148. doi:10.1016/j.jmarsys.2014.08.007

McCauley, D.J., Pinsky, M., Palumbi, S.R., Estes, J.A., Joyce, F.H., Warner, R.R. 2015 Marine defaunation: Animal loss in the global ocean  Science 347, DOI: 10.1126/science.1255641

IMCS Academic Publications: 2014 PDF Print E-mail

Crum, K. P., Fuchs, H. L., Bologna, P. A., Gaynor, J. J. 2014. Model-to-data comparisons reveal influence of jellyfish interactions on plankton community dynamics . Marine Ecology Progress Series. 517: 105-119. doi: 10.3354/meps11022 

Kennish, M. J., M. S. Meixler, G. Petruzzelli, and B. Fertig. 2014. Tuckerton Peninsula salt marsh system:  a sentinel site for assessing climate change effects. Bulletin of the New Jersey Academy of Science, 59(2): 1-5. 

Wang, X., Q. Li, J. Lian, L. Li, L. Jin, H. Cai, F. Xu, H. Qi, L. Zhang, F. Wu, J. Meng, H. Que, X. Fang, X. Guo and G. Zhang. 2014. Genome-wide and single-base resolution DNA methylomes of the Pacific oyster Crassostrea gigas provide insight into the evolution of invertebrate CpG methylation.  BMC Genomics, 15(1):1119.

Zhang, N., F. Xu & X. Guo. 2014. Genomic analysis of the Pacific oyster (Crassostrea gigas) reveals possible conservation of vertebrate sex determination in a Mollusc. G3: Genes| Genomes| Genetics, 4:2207-2217. doi:10.1534/g3.114.013904

Fellous, A., P. Favrel, X. Guo and G. Riviere. 2014. The Jumonji gene family in Crassostrea gigas suggests evolutionary conservation of Jmj-C histone demethylases orthologues in the oyster gametogenesis and development. Gene 538: 164-175.

Zhang, L., L. Li, Y. Zhu, G. Zhang and X. Guo. 2014. Transcriptome analysis reveals a rich gene set related to innate immunity in the eastern oyster (Crassostrea virginica). Marine Biotechnology, 16:17-33.

Yang, H., Y. Wang, X. Guo and T.R. Tiersch. 2014. Production of inbred larvae through self-fertilization using oocytes and cryopreserved sperm from the same individuals after sex reversal in eastern oyster Crassostrea virginica. Aquaculture Research, doi:10.1111/are.12371. 

Able, K. W., and F. J. Fodrie. 2015 Distribution and dynamics of habitat use by juvenile and adult flatfishes. Pp. 242-282 In: R. N. Gibson, R. D. M. Nash, A. J. Geffen, and H. W. Van der Veer (Eds.), Flatfishes: Biology and Exploitation (2nd edition), John Wiley and Sons Ltd., West Sussex, UK.

K.P. Crum, H.L. Fuchs, P.A.X. Bologna, and J.J. Gaynor. 2014. Model-to-data comparisons reveal influence of jellyfish interactions on plankton community dynamics. Marine Ecology Progress Series 517: 105-119.

Levitan, O., Dinamarca, J., Zelzion, E., Lun, D. S., Guerra, T. L., Kim K. M., Kim J., Van Mooy B. A. S., Bhattacharya, D., Falkowski, P. G. 2014. Remodeling of intermediate metabolism in the diatom Phaeodactylum tricornutum under nitrogen stress. Proceedings of the National Academies. 

Kustka, A. B., Milligan, A. J., Zheng, H., New, A. N., Gates, C., Bidle, K. D., Reinfelder, J. R. 2014. Low CO2 results in a rearrangement of carbon metabolism to support C4 photosynthetic carbon assimilation in Thalassiosira pseudonana . New Phytoplogist.  204: 507-520. doi: 10.1111/nph.12926

Schieler, B. M., Hale, E. A., Targett, T. E. 2014. Daily variation in ingress of fall-spawned larval fishes into Delaware Bay in relation to alongshore and along-estuary wind components . Estuarine, Coastal and Shelf Science. 151: 141-147.

Ghatak, D., E. Sinsky, and J. Miller, 2014.  Role of snow-albedo feedback in higher elevation warming over the Himalayas, Tibetan Plateau and Central Asia. Environmental Research Letters 9, doi:10.1088/1748-9326/9/11/114008. 

Chen,Y. C.M. Naud, I. Rangwala, C.C. Landry, and J.R. Miller, 2014.  Comparison of the sensitivity of surface downward longwave radiation to changes in water vapor at two high elevation sites.  Environmental Research Letters 9, doi:10.1088/1748-9326/9/11/114015 

Vetriani, C., Voordeckers, J. W., Crespo-Medina, M., O’Brien, C., Giovannelli, D. and Lutz, R. A. 2014. Deep-sea hydrothermal vent Epsiloproteobacteria encode for a conserved and widespread nitrate reduction pathway (Nap). ISME J. 8:1510-1521. doi:10.1038/ismej.2013.246. 

Pérez-Rodríguez, I., Bolognini, M., Ricci, J., Bini, E. and Vetriani, C. From deep-sea volcanoes to human pathogens: A conserved quorum sensing signal in EpsilonproteobacteriaISME J.,doi:10.1038/ismej.2014.214. 

Munroe, D. M., Klinck, J. M., Hofmann, E. E., Powell, E. N. 2014. A modelling study of the role of marine protected areas in metapopulation genetic connectivity in Delaware Bay oysters . Aquatic Conservation: Marine and Freshwater Ecosystems. 24: 645-666. DOI: 10.1002/aqc.2400 

Van De Plassche,  O., Wright, A. J., Horton, B. J., Engelharrt, S. E., Kemp, A. C., Mallinson, D., Kopp, R. E. 2014. Estimating tectonic uplift of the Cape Fear Arch (south-eastern United States) using reconstructions of Holocene relative sea level . Journal of Quanternary Science 29(8): 749-759. DOI: 10.1002/jqs.2746

Woodward, S. C., Rosenthal, Y., Miller, K. G., Wright, J. D., Chiu, B. K., Lawrence, K. T. 2014. Antarctic role in Northern Hemisphere glaciation .  

Xu, G., Jackson, D. R., Bemis, K. G., Rona, P. A. 2014. Time-series measurement of hydrothermal heat flux at the Grotto mound, Endeavour Segment, Juan de Fuca Ridge.  Earth and Planetary Science Letters. 404: 220-231. 

Pasotti, F., Manini, E., Giovannelli, D., Wolfl, A., Monien, D., Verleyen, E., Braeckman, U., Abele, D., Vanreusel, A. 2014. Antarctic shallow water benthos in an area of recent rapid glacier retreat . Marine Ecology. doi: 10.1111/maec.12179 

Narvaez, D. A., Munroe, D. M., Hofmann, E. E., Klinck, J. M., Powell, E. N., Mann, R., Curchitser, E. 2014. Long-term dynamics in Atlantic surfclam (Spisula solidissima) populations: The role of bottom water temperature . Journal of Marine Systems.  

Able, K. W., Lopez-Duarte, P. C., Fodrie, J. F., Jensen, O. P., Martin, C. W., Roberts, B. J., Valenti, J., O'Conner, K., Halbert, S. C. 2014. Fish assemblages in Louisiana salt marshes: Effects of the Macondo oil spill. Estuaries and Coasts DOI 10.1007/s12237-014-9890-6

Schofield, O., Kohut, J., Saba, G., Yi, X., Wilkin, J., Glenn, S. 2014. Oceans: Observation and Prediction. In Encyclopedia of Natural Resources: Water. Taylor and Francis: NY, p. 802-807. doi/book/10.1081/E-ENRW

Pilarczyk, J. E., Dura, T., Horton, B., Engelha, S. E. 2014. Microfossils from coastal enironments as indicators of paleo-earthquakes, tsunamis and stotrms . Palaeography, Paleoclimatology, Paleoecology. 

Bricelji, M. V., Cembella A. D., Laby, D. 2014. Temperature effects on kinetics of paralytic shellfish toxin elmination in Atlantic surfclams, Spisula solidissma. Deep-Sea Research Reearch II.  

Fodrie, J. F., Able, K. W., Galvez, F., Heck, K. L., Jensen, P. P., Lopez-Duarte, P. C., Martin, C. W., Turner, E. R., Whitehead, A. 2014. 2014. Intregrating organismal and population responses of esturarine fishes in Macondo spill research . BioScience. 64(9):778-788. doi:10.1093/biosci/biu123  

Rolton, A.,  Vignier, J., Soudant, P., Shumway, S. E., Bricelji, M. V., Volety, A. 2014. Effects of the red tide dinoflaggelate, Crassostrea virginica and norther quahog Mercenaria mercenaria . Aquatic toxicology. 155: 196-206.  

Mass, T., Drake, J. L., Peters, E. C., Jiang, W., Falkowski, P. G. 2014. Immunolocalization of skeletal matrix proteins in tissue and mineral of the coral Stylophora pistillata . Proceedings of the National Academies of Science. 

Constable, A., Costa, D., Murphy, E., Hofmann, E., Schofield, O., Press, A., Johnson, N. M., Newman, L. 2014. Assessing status and change in Southern ecosystems. In De Broyer C., Koubbi P., Griffiths, H. J., Raymond, B., Udekem d'Acoz C. d' (eds). Biogeographic Atlas of the Southern Ocean. Scientific Committee on Antarctic Research, Cambridge, pp. 404-407. 

Foflonker, F., Price, D. C., Qiu, H., Palenik, B., Wang, S., Bhattacharya, D. 2014. Genome of the halotolerant green alga Picochlorum sp. reveals strategies for thriving under fluctuating environmental conditions. Environmental Microbiology. doi:10.1111/1462-2920.12541  

Cheng, S., Price, D. C., Karkar, S., Bhattacharya, D. 2014. Exploring biotic interactions within protist cell populations using network methods. Eukaryotic Microbiobiology. DOI: 10.1111/jeu.12113 

Babila, T., Rosenthal, Y., Conte, M. H. 2014. Evaluation of the biogeochemical controls on B/Ca of Globigerinoides ruber white from the Oceanic Flux Program, Bermuda. Earth and Planetary Science Letters 404: 67-76. 

Liu, Z., Zhu, J., Rosenthal, Y., Zhang, X., Otto-Bliesner, B. L., Timmermann, A., Smith, R S., Lohmann, G., Zheng, W., Timm, O. E. 2014. The holocene temperature conundrum . Proceedings of the National Academy of Sciences. 

Tuorto, S., Taghon, G. L. 2014. Rates of benthic bacterivory of marine ciliates as a function of prey concentration. Journal of Experimental Marine Biology. 460: 129134.

Free C. M., Landis R. M. , Grogan J., Schulze M. D., Lentini M., Dünisch O. 2014.Management implications of long-term tree growth & mortality rates: a modeling study of big-leaf mahogany (Swietenia macrophylla) in the Brazilian Amazon . Forest Ecology & Management 330: 46–54. 

Hinckley, E.S., R.T Barnes, S.P. Anderson, M.W.Williams, and S.M. Bernasconi 2014. Nitrogen retention and transport differ by hillslope aspect at the rain-snow transition of the Colorado Front Range. Journal of Geophysical Research- Biogeosciences. DOI: 10.1002/2013JG00258

Dubois, N., Oppo, D. W., Galy, V. V., Mohtadl, M., van der Kaars, S., Tiernery, J. E., Rosenthal, Y., Eglinton, T. I., Luckge, A., Linsley, B. K. 2014. Indonesian vegetation response to changes in rainfall seasonality over the past 25,000 years. Nature Geoscience. doi: 10.1038/NGEO2182

Saba, G. K., Fraser, W. R., Saba, V. S., Iannuzzi, R. A., Coleman, K. A., Doney, S. C., Ducklow, H., Martinson, D. G., Miles, T. N., Patterson-Fraser, D. L., Stammerjohn, S. E., Steinbergy, D. K., Schofield, O. 2014. Winter and spring controls on the summer food web of the coastal West Antarctic Peninsula . Nature Communications 5:4318 doi: 10.1038/ncomms5318 

Lathrop, R. G., Jr., S. M. Haag, D. Merchant, M. J. Kennish, and B. Fertig. 2014. Comparison of remotely-sensed surveys vs. in situ plot-based assessments of sea grass condition in Barnegat Bay-Little Egg Harbor, New Jersey USA. Journal of Coastal Conservation. 18: 299-308 doi:10.1007/s11852-014-0319-y. 

Kopp, R. E., Horton, R. M., Little, C. M., Mitrovica, J. X., Oppenheimer, M., Rasmussen, D. J., Strauss, B. H., Tebaldi, C. 2014. Probabilistic 21st and 22nd century sea-level projections at a global network of tide gauge sites. Earth's Future. doi:10.1002/2014EF000239 

Free, C. M., Jensen, O. P., Mason, S. A., Eriksen, M., Williamson, N. J., Boldgiv, B. 2014. High-levels of microplastic pollution in a large, remote, mountain lake . Marine Pollution Bulletin 

Sipler, R. E., McGuinness, L. R., Kirkpatrick, G. J., Kerkhof, L. J., Schofield, O. M. 2014. Bacteriocidal effects of brevetoxin on natural microbial communities . Harmful Algae.  

Lathrop, R. Auermuller, L., Trimble, J., Bognar, J. 2014. The application of WebGIS tools for visualizing coastal flooding vulnerability and planning for resiliency: The New Jersey experience . ISPRS International Journal of Geo-Information. 3: 408-429; doi:10.3390/ijgi3020408  

Colombo, M. J., Ha, J., Reinfelder, J. R., Barkay, T., Yee, N. 2014. Oxidation of Hg(0) to Hg(II) by diverse anaerobc bacteria . Chemical Geology. 363: 334-340. 

Able, K. W., Grothues, T. M., Rackovan, J. L., Buderman, F. E. 2014. Application of mobile dual-frequency identification sonar (DIDSON) to fish in estuarine habitats . Northwestern naturalist. 21(2): 192-209. 

Hilborn, R. D. J. Hively, O.P. Jensen, and T. A. Branch. 2014. The dynamics of fish populations at low abundance and prospects for rebuilding and recovery.  ICES Journal of Marine Science. doi:10.1093/icesjms/fsu035 

Foley, P. and B. McCay. 2014. Certifying the commons: eco-certification, privatization, and collective action. Ecology and Society 19 (2): 28. [online] URL:

Micheli, F., Giulio De Leo, Sheste, G., Martone R. G., Lluch-Cota S., Butner C., Crowder, L. B., Fujita R., Gelcich S., Jain M., Lester S. E., McCay B., Pelc R., Sáenz-Arroyo A. 2014.  A system-wide approach to supporting improvement in seafood production practices and outcomes.  Frontiers in Ecology and the Environment 2014; doi:10.1890/110257. 

Harel, A., Bromberg, Y., Falkowski, P. G., Bhattacharya, D. 2014. Evolutionary history of redox metal-binding domains across the tree of life . Proceedings of the National Academy of Sciences. 

Lathrop, R., Auermuller, L., Trimble, J., Bignar, J. 2014. The application of WebGIS tools for visualizing coastal flooding vulnerability and planning for resiliency: The New Jersey experience . ISPRS International Journal of Geo-Informatics. doi:10.3390/ijgi3020408 

Pilarczyk, J. E., Goff, J., Mountjoy, J., Lamarche, G., Pelletier, B., Horton, B. P. 2014. Sediment transport trends from a tropical Pacific lagoon as indicated by Homotrema rubra taphonomy: Wallis Island, Polynesia. Marine Micropaloentology 109: 21-29. 

Brown, A. L., Reinhardt, E. G., van Hengstum, P. J., Pilarczyk, J. E. 2014. A coastal Yucatan sinkhole records intense hurricane events. Journal of Coastal Research. 30(2): 418-428. doi: 10.2112/JCOASTRES-D-13-00069.1 

Horton, B. P., Rahmstorf, S., Engelhart, S. E., Kemp, A. C. 2014. Expert assessment of sea-level rise by AD 2100 and AD 2300 . Quaternary Science Reviews. 

Nikitina, D. L., Kemp, A., Horton, B. P., Vane, C. H. 2014. Storm erosion during the past 2000 years along the north shore of Delaware Bay, USA . Geomorpology.

Jones, K. M. M. M., McGrath, P. E., Able, K. W. 2014. White perch Morone americana (Gmelin, 1789) habitat choice and movements: Comparisons between Phragmites-invaded and Spartina reference marsh creeks based on acoustic telemetry . Journal of Experimental Marine Biology. 455 (2014) 1421.

Aslan, C., M., Pinsky, M. L., Ryan, M.,  Souther, S., Terrell, K. 2014. Cultivating creativity in conservation science.Conservation Biology 28(2): 345-353 doi:10.1111/cobi.12173 

Kennish, M. J., M. J. Brush, and K. A. Moore (eds.). 2014. Drivers of Change in Shallow Coastal Photic Systems. Estuaries and Coasts, Volume 37, Supplement 1, 242 pp. ISSN 1559-2723.

Kennish, M. J., M. J. Brush, and K. A. Moore. 2014. Drivers of change in shallow coastal photic systems:  an introduction to a special issue. Estuaries and Coasts 37, (Suppl. 1): S3-S19. doi:10.1007/s1223701497794 

Fertig, B., M. J. Kennish, G. P. Sakowicz, and L. K. Reynolds. 2014. Mind the data gap: identifying and assessing drivers of changing eutrophication condition. Estuaries and Coasts 37, (Suppl. 1): S198-221. doi:10.1007/s1223701397465 

Smith, M. A., Walker, N. J., Free, C. M., Kirchhoff, M. J., Drew, G. S., Warnock, N., Stenhouse, I. J. 2014. Identifying marine Important bird areas using at-sea survey data . Biological Conservation 172: 180-189. 

Kennish, M. J., Spahn, A., Sakowicz, G. P. 2014. Sentinel site development of a major salt marsh system in the Mid-Atlantic region (USA). Open Journal of Ecology. 44: 77-86.

Seyler, L. M.,  McGuinness, L. M., Kerkhof, L. J. 2014.  Crenarchaeal heterotrophy in salt marsh sediments .  ISME J.  doi:10.1038/ismej.2014.15 

Galaasen, E. V.,  Ninnemann, U. S., Irvali, N., Kleiven, H. F., Rosenthal, Y., Kissel, C., Hodell, D. A. 2014. Rapid reductions in North Atlantic deep water during the peak of the late interglacial period . Science. 10.1126/science.1248667  Science News/Views synposis

Andrianasolo, E. H., Haramaty, L., White, E., Lutz, R., Falkowski, P. G. 2014. Mode of action of diterpene and characterization of related metabolites from the soft coral, Xenia elongata . Marine Drugs.12, 1102-1115; doi:10.3390/md12021102  

Grogan, J., Landis, M. R., Free, C. M., Schulze, M. D., Lentini, M., Ashton, M. S. 2014. Big-leaf mahogany Swietenia macrophylla population dynamics and implications for sustainable management. Journal of Applied Ecology 51: 664-674. doi:10.1111/1365-2664.12210. June 2014 Editor's Choice .

de Bruyn, M., M. L. Pinsky, B. Hall, P. Koch, C. Baroni, and A. R. Hoelzel. 2014.Rapid increase in southern elephant seal genetic variation after a founder event. Proceedings of the Royal Society B: Biological Sciences 281: 20133078 doi: 10.1098/rspb.2013.3078

Pinsky, M. L. and S. R. Palumbi (2014) Meta-analysis reveals lower genetic diversity in overfished populations. Molecular Ecology 23: 29-39 doi: 10.1111/mec.12509 Cover article. News & Views perspective by Allendorf et al.

Nelson, E., P. Kareiva, M. Ruckelshaus, K. Arkema, G. Geller, E. Girvetz, D. Goodrich, V. Matzek, M. Pinsky, W. Reid, M. Saunders, D. Semmens, and H. Tallis. 2013. Climate change's impact on key ecosystem services and the human well-being they support in the United States. Frontiers in Ecology and Evolution 11(9): 483-493 doi: 10.1890/120312 

Jurisa, Joseph T., Robert J. Chant, 2013: Impact of Offshore Winds on a Buoyant River Plume System. J. Phys. Oceanogr., 43, 2571–2587. doi: 

Hay, C., Mitrovica, J. X., Gomez, N., Creveling, J. R., Austermann, J., Kopp, R. E. 2014. The sea-level fingerprints of ice-sheet collapse during interglacial periods . Quaternary Science Reviews. 87: 60-69.

Rose, S.L., J. Fulton, C.M. Brown, F. Natale, B.A.S. Van Mooy, and K.D. Bidle. 2014. Isolation and characterization of lipid rafts in Emiliania huxleyi: a role for membrane microdomains in host-virus Interactions. Environ. Microbiol. (doi:10.1111/1462-2920.12357)

Fulton, J.M, H.F. Fredricks, K.D. Bidle, A. Vardi, B.J. Kendrick, G.R. DiTullio and B.A.S. Van Mooy. 2014 Novel molecular determinants of viral susceptibility and resistance in the lipidome of Emiliania huxleyi. Environ. Microbiol. (doi:10.1111/1462-2920.12358).


IMCS Academic Publications: 2013 PDF Print E-mail

Colombo, M. J., Ha, J., Reinfelder, J. R., Barkay, T., Yee, N. 2013. Anaerobic oxidation of Hg(0) and methylmercury formation by Desulfovibrio desulfuricans ND132 . Geochmica et Cosmochimica Acta. 112:166-177.

Reinfelder, J. 2013. Sea Changes. Nature 500: 533. 

Traique, Q., Burger, J., Reinfelder, J. R. 2013. Relative importance of burrow sediment and porewater to the accumulation of trace metals in the clam Amiantic umbonella. Arch Environ Contam Toxicol 65:89–97 DOI 10.1007/s00244-013-9874-8 

McCay, Bonnie J., Fiorenza Micheli, German Ponce-Diáz, Grant Murray, Geoff Shester, Saudiel Ramirez-Sanchez, and Wendy Weisman. 2013. Cooperatives, concessions, and co-management on the Pacific coast of Mexico. Marine Policy 44: 49-59. 

Kuang, D., Curchister, E. N. 2013. 2013. Gulf Stream eddy characteristics in a high-resolution model.  Journal of Geophysical Research. 118, 4474-4487. doi: 10.1002/jgrs.20318. 

Bricelji, M. V., Cembella, A. D., Laby, D. 2013. Temperature effects on kinetics of papralytic shellfish toxin elimination in Atlantic surfclams, Spisula solidissima . Deep-Sea Research II.  

Muller-Karger, F., Roffer, M., Walker, N., Oliver, M., Schofield, O., Abbott, M., Graber, H., Leben, R., Goni, G. 2013. Satellite remote sensing in support of an integrated ocean observing system . Geoscience and Remote Sensing Magazine, IEEE. 1:8-14. doi:10.1109/MGRS.2013.2289656 

Guevelou, E., Huvet, A., Sussarellu, R., Milan, M., Guo, X., Li, L. Zhang, G., Quillien, V., Daniel, J., Quere, C., Boudry, P. Corporeau, C. 2013. Regulation of a truncated isoform of AMP-activated protein kinase alpha (AMPK-alpha) in response to hypoxia in the muscle of Pacific oyster Crassostrea gigas .  Journal of Compartive Physiology B. DOI 10.1007/s00360-013-0743-6

Wang, H., Qian, L., Wang, A., Guo, X. 2013. Occurrence and distribution of Crassostrea sikamea (Amemiya 1928) in China . BioOne. 

Yang, H., Supan, J., Guo, X., Tiersch, T. R. 2013. Nonlethal sperm colleclion and cryopresevation in the Eastern Oyster Crassostrea virginica .  BioOne

Zhang, L., Zhu, Y., Zhang, G., Guo, X. 2013. Transcriptome analysis reveals a rich gene set related to innate immunity in the Eastern Oyster (Crassostrea virginica) . Marine Biotechnology. DOI 10.1007/s10126-013-9526-z 

Iacchei, M., Ben-Horin, T., Selkoe, K. A., Bird, C. E., Garcia-Ridriguez, F. J., Toonen, R. J. 2013. Combined analyses of kinship and Fst suggest potential drivers of chaotic genetic patchiness in high gene-flow populations . Molecualr Ecology. 22: 3476-3494. 

Lafferty, K. D., Ben-Horin, T. 2013. Abalone farm discharges the withering syndrome pathogen into the wild. Frontiers in Microbiology. doi: 10.3389/fmicb.2013.00373  

Bar-Zeev, E., I. Avishay, K.D. Bidle and I. Berman-Frank. 2013. Programmed cell death in the marine cyanobacteriumTrichodesmium mediates carbon and nitrogen export. ISME Journal 7(12): 2340-2348.

Read, B., et al. (total of 73 authors). 2013. Pan genome of the phytoplankton Emiliania underpins its global distribution. Nature. 499:209-213.

Seth-Pasricha, M., K.A. Bidle, and K.D. Bidle. 2013. Specificity of archaeal caspase activity in the extreme halophile Haloferax volcanii. Environ. Microbiol. Reports 5(2): 263-271. 

Musumeci, V. L., K. W. Able, M. C. Sullivan, and J. M. Smith. 2013. Estuarine predator-prey interactions in the early life history of two eels (Anguilla rostrata and Conger oceanicus). Environmental Biology of Fishes DOI 10.1007/s10641-013-0194-7.

Wuenschel, M. J., K. W. Able, J. M. Vasslides and D. M. Byrne. 2013. Habitat and diet overlap of 4 piscivorous fishes: variation on the inner continental shelf off New Jersey. Fishery Bulletin 111:352-369.

Barnes, R. T., Williams, M. W., Parman, J. N., Hill, K., Caine, N. 2013. Thawing glacial and permafrost features contribute to nitrogen export from Green Lakes Valley, Colorado front range, USA . Biogeochemistry. DOI 10.1007/s10533-013-9886-5 

Kopp, R. E., Simons, F. J., Mitrovica, J. X., Maloof, A. C., Oppenheimer, M. 2013. A probabilistic assessment of sea level variations within the last interglacial stage . Geophysical Journal International 191: 711-716. doi: 10.1093/gji/ggt029 

Lavelle, J. W., Di Iorio, D., Rona, P. 2013. A turbulent convection model with an observational context for a deep-sea hydrothermal plume in a time-variable cross flow . Journal of Geophysical Research. Oceans. doi:10.1002/2013JC009165 

Powers, S. P., Hernandez, F. J., Condon, R.H., Drymon, M. J., Free, C. M. 2013. Novel pathways for injury from offshore oil spills: Direct, sublethal and indirect effects of Deepwater Horizon oil spill on pelagic Sargassum communities . PLOS One. 8(9): e74802. doi:10.1371/journal.pone.0074802 

Miller, K.G., Kopp, R.E., Horton, B.P., Browning, J.V., Kemp, A.C., 2013. A geological perspective on sea-level rise and its impacts along the U.S. mid-Atlantic coast, Earth's Future, doi:10.1002/2013EF000135 

Horton, B. J., Rahmstorf, S., Engelhart, S. E., Kemp, A. C. 2013. Expert assessment of sea-level rise by AD 2100 and AS 2300 .  Quaternary Science Reviews.

Miskewitz, R., Uchrin, C. 2013. In-stream dissolved oxygen impacts and sediment oxygen demand resulting from combined sewer overflow discharges . Journal of Environmental Enginnering.  doi:10.1061/(ASCE)EE.1943-7870.000739

Sikes, E.L., Medeiros, P. M., Augustinus, P., Wilmshurst, J. M., Freeman, K. R. 2013. Seasonal variations in aridity and temperature characterize changing climate during the last deglaciation in New Zealand . Quaternary Science Reviews. 

Munroe, D. M., Hoffmann, E. E., Powell, E. N., Kilnck, J. M. 2013. How do shellfisheries influence genetic connectivity in metapopulations? A modeling study examining the role of lower size limits in oyster fisheries . Candanian Journal Fishery Aquatic Science. 

Munroe, D., Tabatabai, A., Burt, L., Bushek, D., Powell, E. N., Wilkin, J. 2013. Oyster mortality in Delaware Bay: Impacts and recovery from Hurricane Irene and Tropical Storm Lee . Estuarine, Coastal and Shelf Science. 

Able, K. W., Grothues, T. M., Turnure, J. T., Malone, M. A., Henkes, G. A. 2013. Dynamics of residency and egress in selected estuarine fishes: evidence from acoustic telemetry . Environmental Biology of Fishes. 97:91-102 DOI: 10.1007/s10641-013-0126-6

Palumbi, S. R. and M. L. Pinsky. 2012. Marine Dispersal, Ecology and Conservation.In Marine Community Ecology, 2nd ed. (M. Bertness, J. Bruno, B. Silliman & J. Stachowicz, eds.). Sinauer Associates, Sunderland, MA 

Naud, C. M., Chen, Y., Rangwala, I., Miller, J. 2013. Sensitivity of downward longwave surface radiation to moisture and cloud change changes in a high-elevation region. Journal of Geophysical Research. 118, 10,07210,081, doi:10.1002/jgrd.50644, 2013 

Guerra, L. T., Levitan, O., Frada, M. J., Sun, J. S., Falkowski, P. G., Dismukes, C. G. 2013. Regulatory branch points affecting protein and lipid biosynthesis in the diatom Phaeodactylum tricornutum.  Biomass & Bioenergy.

Kemp, A. C., Horton, B. P., Vane, C. H., Bernhardt, C. E., Corbett, D. R., Engelhart, S. E., Anisfeld, S. C., Parnell A. C., Cahill, N. 2013. Sea-level change during the last 2500 years in New Jersey , USA. Quaternary Science Reviews. 81: 90-104.  

Rosenthal, Y., Linsley, B. K., Oppo, D. W. 2013. Pacific ocean heat content during the past 10,000 years. Science 342, 617. DOI: 10.1126/science.1240837 

Schofield, O., Glenn, S. M., Moline, M. A. 2013. The robotic ocean network. American Scientist. 101: 434-441. 

Sailley, S. F., Ducklow, H. W., Moeller, H. V., Fraser, W. R., Schofield, O., Steinberg, D. K., Garzio, L. M., Doney, S. C. 2013. Carbon fluxes and pelagic ecosystem dynamics near two western Antarctic Peninsula Adelie penguin colonies: An inverse model approach. Marine Ecology Progress Series. 492: 253-272. doi: 10.3354/meps10534 

Falkowski P., Jelen B.: Microbial Genomes That Drive Earth's Biogeochemical Cycles. In: Nelson K. (Ed.) Encyclopedia of Metagenomics: SpringerReference ( Springer-Verlag Berlin Heidelberg, 2013. DOI: 10.1007/SpringerReference_367744 2013-10-20 09:03:17 UTC 

Harrold, J. W., Woronowicz, K., Lamptey, J. l., Awong, J., Baird, J., Moshar, A., Vittadello, M., Falkowski, P. G., Niederman, R. A. 2013. Functional interfacing of Rhodospirillum rubrum chrmatophores to a conducting support for capture and conversion of solar energy . The Journal of Physical Chemistry. 

Pinsky, M. L., B. Worm, M. J. Fogarty, J. L. Sarmiento, and S. A. Levin. 2013. Marine taxa track local climate velocities. Science. 341: 1239-1242 doi:10.1126/science.1239352 

Mills, S. W., Mullineaux, L. S., Beaulieu, S. E., Adams, D. K. 2013. Persistent effects of disturbance on larval patterns in the plankton after an eruption on the East Pacific Rise. Marine Ecology Progress Series. doi: 10.3354/meps10463 

Xu, G., Jackson, D. R., Bemis, K. G., Rona, P. A. 2013. Observations of the volume flux of a seafloor hydrothermal plume using an acoustic imaging sonar .  Geochemistry Geophysics Geosystems 14(7): doi: 10.1002/ggge.20177

Vane, C. H., Kim, A. W., Moss-Hayes, V., Snape, C. E., Diaz, M. C., Khan, N. S., Engelhardt, S. E., Horton, B. P. 2013. Degradation of mangrove tissues by arboreal termites (Nasutitermes acajutlae) and the role in the mangrove C cycle (Puerto Rico): Chemical characterization and organic matter provenance using bulk 13C, C/N, alkaline CuO oxidation-GC/MS, and solid state 13C NMR . Geochemistry Geophysics Geosystems 14(8): doi: 10.1002/ggge.20194 

Kemp, A. C., Telford, R. J., Horton, B. J., Anisfeld, S. C., Sommerfield, C. K. 2013. Reconstructing Holocene sea level using salt-march foraminifera and transfer functions: lessons from New Jersey, USA . Journal of Quaternary Science. 28(6):617-629. DOI: 10.1002/jqs.2657 

Huan Qiu, Hwan Su Yoon, and Debashish Bhattacharya. 2013. Algal endosymbionts as vectors of horizontal gene transfer in photosynthetic eukaryotes. Frontiers in Plant Science doi: 10.3389/fpls.2013.00366

Depriest MS, Bhattacharya D, López-Bautista JM. 2013. The plastid genome of the red macroalga Grateloupia taiwanensis (Halymeniaceae). PLoS One. 2013 Jul 19;8(7):e68246.

Skorupa DJ, Reeb V, Castenholz RW, Bhattacharya D, McDermott TR. 2013. Cyanidiales diversity in Yellowstone National Park. Letters in Applied Microbiology Jul 19. doi: 10.1111/lam.12135. [Epub ahead of print]

Shoguchi E, Shinzato C, Kawashima T, Gyoja F, Mungpakdee S, Koyanagi R, Takeuchi T, Hisata K, Tanaka M, Fujiwara M, Hamada M, Seidi A, Fujie M, Usami T, Goto H, Yamasaki S, Arakaki N, Suzuki Y, Sugano S, Toyoda A, Kuroki Y, Fujiyama A, Medina M, Coffroth MA, Bhattacharya D, Satoh N. 2013. Draft assembly of the Symbiodinium minutum nuclear genome reveals dinoflagellate gene structure. Current Biology 23:1399-1408.

Bhattacharya D, Price DC, Chan CX, Qiu H, Rose N, Ball S, Weber AP, Cecilia Arias M, Henrissat B, Coutinho PM, Krishnan A, Zäuner S, Morath S, Hilliou F, Egizi A, Perrineau MM, Yoon HS. 2013. Genome of the red alga Porphyridium purpureum. Nature Communications 4:1941. 

Jeferson Gross, Sana Wajid, Dana C. Price, Ehud Zelzion, Junyi Li, Cheong Xin Chan, Debashish Bhattacharya. 2013. Evidence for widespread exonic small RNAs in the glaucophyte alga Cyanophora paradoxa. PLoS ONE 8(7): e67669.  

Tuorto, S. J., Darias, P., McGuinness, L. R., Panikov, N., Zhang, T., Haggblom, M. M., Kerkhof, L. J. 2013. Bacterial genome replication at subzero temperatures in permafrost. The ISME Journal. doi:10.1038/ismej.2013.140 

Gerbi, G. R. J. Chant, J L. Wilkin,  2013.  Breaking Surface wave effects on river plume dynamics during upwelling favorable winds . Journal of Physical Oceanography  23:1959-1980 DOI: 10.1175/JPO-D-12-0185.1 

Weis, J. S.  2013. Physiological, Developmental and Behavioral Effects of Marine Pollution. Springer Verlag, New York. XVII, 452 p.

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Aristizabal, M.  and R.J. Chant. (2013), A Numerical Study of Salt Fluxes in Delaware Bay Estuary, Journal of Physical Oceanography,DOI. Aug2013, Vol. 43 Issue 8, p1572-1588. DOI: 10.1175/JPO-D-12-0124.1 

Fraser, W.R., D.L. Patterson-Fraser, C.A. Ribic, O. Schofield, and H. Ducklow. 2013. A nonmarine source of variability in Adélie penguin demography. Oceanography  26(3):207–209, 

Schofield, O., H. Ducklow, K. Bernard, S. Doney, D. Patterson-Fraser, K. Gorman, D. Martinson, M. Meredith, G. Saba, S. Stammerjohn, and others. 2013. Penguin biogeography along the West Antarctic Peninsula: Testing the Canyon Hypothesis with Palmer LTER observations . Oceanography  26(3):204–206, 10.5670/oceanog.2013.63. 

Ducklow, H.W., W.R. Fraser, M.P. Meredith, S.E. Stammerjohn, S.C. Doney, D.G. Martinson, S.F. Sailley, O.M. Schofield, D.K. Steinberg, H.J. Venables, and C.D. Amsler. 2013. West Antarctic Peninsula: An ice-dependent coastal marine ecosystem in transition . Oceanography  26(3):190–203, 

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Kemp, A., Horton, B. P. 2013. Contribution of relative sea-level rise to historical hurricane flooding in New York City.  Journal of Quaternary Science. doi: 10.1002/jqs.2653 

Ghatak, D., Miller, J. 2013. Implications for Arctic amplification of changes in the strength of the water vapor feedback. Journal of Geophysical Research: Atmospheres 118, 110, doi:10.1002/jgrd.50578

Engelhart, S. E., Horton, B. P., Nelson, A. R., Hawkes, A. D., Witter, R. C., Wang, K., Wang, P.-L., Vane, C. H. 2013. Testing the use of microfossils to reconstruct great earthquakes at Cascadia.  Geology. doi:10.1130/G34544.1 

Biesinger, Z., Bolker, B. M., Marcinek, D., Grothues, T. M., Dobarro, J. A., Lindberg, W. J. 2013. Testing an autonomous acoustic telemetry positioing system for fine-scale space use in marine animals.  Journal of Experimental Marine Biology and Ecology. 448: 46-53. 

Kopp, R. E. 2013. Does the mid-Atlantic United States sea-level acceleration hot spot reflect ocean dynamic variability?  Geophysical Research Letters. 40, 1-5, doi:10.1002/grl.50781

D.F. Boesch, L.P. Atkinson, W.C. Boicourt, J.D. Boon, D.R. Cahoon, R.A. Dalrymple, T. Ezer, B.P. Horton, Z.P. Johnson, R.E. Kopp, M. Li, R.H. Moss, A. Parris, C.K. Sommerfield 2013. Updating Maryland’s Sea-level Rise Projections. Special Report of the Scientific and Technical Working Group to the Maryland Climate Change Commission . Cambridge, MD: University of Maryland Center for Environmental Science. 

Wang, P., Engelhart, S. E., Wang, K., Hawkes, A. D., Horton, B. P., Nelson, A. R., Witter, R. C. 2013. Heterogeneous rupture in the great Cascadia earthquake of 1700 inferred from coastal subsidence estimates. Journal of Geophysical Research, Solid Earth. VOL. 118, 114, doi:10.1002/jgrb.50101

Horton, B. J., Engelhart, S. E., Hill, D. F., Kemp, A. C., Nikitina, D., Miller, K. G., Peltier, R. W. 2013. Influence of tidal-schange and sediment compaction on Holocene relative sea-level change in New Jersey, USA . Journal of Quaternary Science 28(4): 403-411. DOI: 10.1002/jqs.2634 

Wilberg, M. J., Wiedenmann, J. R., Robinson, J. M. 2013. Sustainable exploitation and management of autogenic ecosystem engineers: Application to oysters in Chesapeake Bay. Ecological Application 23(4): 766-776.  

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Kim, J. D., Senn, S., Harel, A., Jelen, B. L., Falkowski, P. G. 2013. Discovering the electronic circuit diagram of life: Structural relatiuonships among transition metal binding sites in oxidoreductases. Philophical Transactions of the Royal Sociey.  368: 20120257.

Oliver, M. J.,m Breece, M. W., Fox, D. A., Haulsee, D. E., Kohut, J. T., Manderson, J., Savoy, T. 2013. Shrinking the haystack: using an AUV in an integrated ocean observatory to map Atlantic sturgeon in the coastal ocean . Fisheries.  38:5, 210-216.

Provost, M. 2013. Tagging black sea bass for sex change data . Fisheries.  38:5, 227-227.

Mass, T., Drake, J., Haramaty, L., Kim, J. D., Zelslon, E., Bhattacharya, D., Falkowski, P. G. 2013. Cloning and Characterization of four novel coral acid-rich proteins that precipitate carbonates in vitro . Current Biology

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Sipler, R.E., D.A. Bronk, S.P. Seitzinger, R.J. Lauck, L.R. McGuinness, G.J. Kirkpatrick, C.A. Heil, L.J.Kerkhof, O.M. Schofield. 2013. Trichodesmium-derived dissolved organic matter is a source of nitrogen capable of supporting the growth of toxic red tide Karenia brevis . Marine Ecology Progress Series 483: 31-45. 

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Able, K. W., M. J. Wuenschel, T. M. Grothues, J. M. Vasslides, and P. M. Rowe.  2013.  Do surf zones in New Jersey provide "nursery" habitat for southern fishes?  Environmental Biology of Fishes 96:661-675.

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Panek, F. M., Weis, J. S. 2013. Diet of the Eastern Mudminnow (Umbra pygmaea DeKay) from two geographically distinct populations within the NorthAmerican native range. Northeastern Naturalist. 20(1): 37-48.

Able, K. W., Grothuses, T. M., Kemp, I. M. 2013. Fine-scale distribution of pelagic sishes relative to a large urban pier . Marine Ecology Progress Series. 476: 185-198. doi: 1-.3354/meps10151

MacDonald, J. A., Weis, J. S. 2013. Fish community features correlate with prop epibionts in Caribbean mangroves . Journal of Experimental Marine Biology and Ecology. 44: 90-98.

Dalyander, P. S., B. Butman, C. Sherwood, R. Signell, J. Wilkin 2013. Characterizing Wave- and Current-Induced Bottom Shear Stress: U.S. Middle Atlantic Continental Shelf , Continental Shelf Research, 52, 73-86, doi:10.1016/j.bbr.2011.1003.1031.

Drake, J., Mass, T., Haramaty, L., Zelzion, E., Bhattacharya, Falkowski, P. G. 2013. Proteomic analysis of skeletal organic matrix from the stony coral Stylophora pistillata . Proceedings of the National Academy of Sceinces.

Fertig, B., Kennish, M.J., Sakowicz, G.P. 2013. Changing eelgrass (Zostera marina L.) characteristics in a highly eutrophic temperate coastal lagoon. Aquatic Botany 104: 70-79

Fertig, B., O'Neil, J.M., Beckert, K.A., Cain, C.J., Needham, D.M., Carruthers, T.J.B., Dennison, W.C. 2013. Elucidating terrestrial nutrient sources to a coastal lagoon, Chincoteague Bay, Maryland, USA . Estuarine, Coastal and Shelf Science 116:1-10   

Oliver MJ ,Irwin A, Moline MA, Fraser W, Patterson D, Schofield O, Kohut J 2013 Adelie Penguin Foraging Location Predicted by Tidal Regime Switching PLoS ONE, Volume 8, Issue 1, e55163

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