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ICES. 2011. SSO Disease of Oysters Caused by Haplosporidium costale . Revised and updated by Susan E. Ford. ICES Identification Leaflets for Diseases and Parasites of Fish and Shellfish. Leaflet No. 39. 4 pp.

ICES. 2011. Dermo disease of oysters caused by Perkinsus marinus . Revised and updated by Susan E. Ford. ICES Identification Leaflets for Diseases and Parasites of Fish and Shellfish. Leaflet No. 30. 5 pp.

Ford, S. E. 2011. Roseovarius Oyster Disease (ROD) caused by Roseovarius crassostreae . ICES Identification Leaflets for Diseases and Parasites of Fish and Shellfish. Leaflet No. 57. 4 pp.

Wilkin, J. L., Jeffs, A. G. 2011. Energetics of swimmingto shore in the puerulus stage of a spiny lobster: Can a postlarval lobster afford the cost of crossing the continental shelf? Limnology & Oceanography: Fluids & Environments. 1: 163-175. DOI 10.1215/21573698-1504363

Chen, Y., Miller, J. R., Francis, J. A., Russell, G. L. 2011. Projected regime shift in Arctic cloud and water vapor feedbacks . Environmental Research Letters. doi:10.1088/1748-9326/6/4/044007

Yu, H., He, Y., Wang, Z., Zhang, Q., Bao, Z., Guo, X. 2011. Polymorphism in a serine protease inhibitor gene and its association with disease resistance on the eastern oyster (Crassostrea virginica Gmelin) . Fish and Immunology 30: 757-762. doi:10.1016/j.fsi.2010.12.015

Lopez-Duarte, P. C., christy, J. H., Tankersley, R. A. 2011. A behavioral mechanism for dispersal in fiddler crab larvae (genus Uca) varies with adult habitat, not phylogeny . Limnology and Oceanography. 56: 1879-1892. doi:10.4319/lo.2011.56.5.1879

Wang, A., Wang, Y., Gu, Z., Li, S., Shi, Y., Guo, X. 2011. Development of Expressed Sequence Tags from the Pearl Oyster, Pinctada martensii Dunker . Marine Biotechnology 13: 275-283.

Sachez, S. R., McCay, B. J., Johnson, T. R., Weisman, W. 2011. Surgimiento, formacion y persistencia de organizaciones sociales para la pesca riberena de la peninsula de Baja California . Region y Sociedad. 52: 71-99

Beck, M. W., Brumbaugh, R. D., Airoldi, L.,Carranza, A., Coen, L. D., Crawford, C., Defeo, O., Edgar, G. J., Hancock, B., Kay, M. C., Lenihan, H. S., Luckenbach, M. W., Torpova, C. L., Zhang, G., Guo. X. 2011. Oysters reefs at risk and recommendations for conservation, restoration, and management . Bioscience 61: 107-116. doi:10.1525/bio.2011.61.2.5

Carson, H. S., Cook, G. S., Lopez-duarte, P., Levin, L. A. 2011. Evaluating the importance of demographic connectivity in a maribe metapopulation . Ecology 92: 1972-1984.

McCay, B. J., Jones, P. J. S. 2011. Marine protected areas and the governance of marine ecosystems and fisheries . Conservation Biology 6: 1130-1133. DOI: 10.1111/j.1523-1739.2011.01771.x

Susan E. Ford, Jenny Paterno, Emily Scarpa, Nancy A. Stokes, Yungkul Kim, Eric N. Powell, David Bushek. 2011 Widespread survey finds no evidence of Haplosporidium nelsoni (MSX) in Gulf of Mexico oysters. Diseases of Aquatic Organisms Vol. 93: 251–256, 2011 doi: 10.3354/dao02306

John N. Kraeuter, Susan Ford, Dave Bushek, Emily Scarpa, William C. Walton, Diane C. Murphy, Gef Flimlin and George Mathis. 2011 Evaluation of Three Northern Quahog (=Hard Clam) Mercenaria mercenaria (Linnaeus) Strains Grown in Massachusetts and New Jersey for QPX-Resistance. Journal of Shellfish Research, Vol. 30, No. 3, 805–812, 2011.

Eric N. Powell, John M. Klinck, Ximing Guo, Susan E. Ford and David Bushek. 2011 The Potential for Oysters, Crassostrea virginica, to Develop Resistance to Dermo Disease in the Field: Evaluation using a Gene-Based Population Dynamics Model. Journal of Shellfish Research, Vol. 30, No. 3, 685–712, 2011.

Gorbunov, M., Kuzminov, F., Fadeev, V. V., Kim, J. D., Falkowski. 2011. A kinetic model of non-photochemical quneching in cyanobacteria . Biochimica et Biophysica Acta. 1807: 1591-1599. doi:10.1016/j.bbabio.2011.08.009

Fuchs, H. L. and C. DiBacco (2011). Mussel larval responses to turbulence are unaltered by larval age or light conditions . Limnology and Oceanography: Fluids & Environments 1: 120-134. 

Falkowski, P.G., Algeo, T., Codispoti, L., Deutsch, C., Emerson, S., Hales, B., Huey, R. B., Jenkins, W. J., Kump, L. R., Levin, L. A., Lyons, T. W., Nelson, N. B., Schofield, O., Summons, R., Talley, L. D., Thomas, E., Whitney, F., Pilcherm C. B. 2011. Ocean Deoxygenation: Past, Present, and Future. EOS, Transactions American Geophysical Union. 92(46): 409-411.   supplemental material

McCay, Bonnie J. and Peter J.S. Jones. 2011.  Marine protected areas and the governance of marine ecosystems and fisheries .  Conservation Biology 25: 1130-1133. 

Ramirez Sanchez, Saudiel, Bonnie J. McCay, Teresa Johnson, and Wendy Weisman 2011. Surgimiento, formación, y persistencia de organizaciones sociales para la pesca ribereña de la península de Baja California: un enfoque antropológico . Region y Sociedad 23 (51): 71-99

 
Fiechter, J., G. Broquet, A.M. Moore, and H.G. Arango. 2011. A data assimilative, coupled physical-biological model for the Coastal Gulf of Alaska. Dynamics of Atmosphere and Oceans. 52: 95-118.
 
Moore, A.M., H.G. Arango, G. Broquet, B.S. Powell, A.T. Weaver, and J. Zavala-Garay, 2011a: The Regional Ocean Modeling System (ROMS) 4-dimensional variational data assimilation systems, Part I: System overview and formulation , Progress in Oceanography, 91, 34-49, doi:10.1016/j.pocean.2011.05.004.
 
Moore, A.M., H.G. Arango, G. Broquet, C. Edwards, M. Veneziani, B.S. Powell, D. Foley, J. Doyle, D. Costa, and P. Robinson. 2011b. The Regional Ocean Modeling System (ROMS) 4-dimensional variational data assimilation systems, Part II: Performance and Applications to the California Current System. Progress in Oceanography, 91, 50-73, doi:10.1016/j.pocean.2011.05.003.
 
Moore, A.M., H.G. Arango, G. Broquet, C. Edwards, M. Veneziani, B.S. Powell, D. Foley, J. Doyle, D. Costa, and P. Robinson, 2011c. The Regional Ocean Modeling System (ROMS) 4-dimensional variational data assimilation systems, Part III: Observation impact and observation sensitivity in the California Current System , Progress in Oceanography, 91, 74-94, doi:10.1016/j.pocean.2011.05.005.

Manderson, J., Palamara, L., Kohut, J., Oliver, M. J. 2011. Featured arcticle: Ocean observatory data are useful for regional habitat modeling of species with different vertical habitat preferences . Marine Ecology Progress Series. 438: 1-17. doi: 10.3354/meps09308

Koblizek, M., Janouskovec, J., Obomik, M., Johnson, J. H., Ferriera, S., Falkowski, P. G. 2011. Genome sequence of the marine photoheterotrophic bacterium Erythrobacter sp. Strain NAP1 . Journal of Bacteriology 193(20): 5881-5882 doi:10.1128/JB.05845-11

Renault, L., G. Vizoso, A. Jansá, J. Wilkin, and J. Tintoré. 2011. Toward the predictability of meteotsunamis in the Balearic Sea using regional nested atmosphere and ocean models  Geophysical Research Letters, 38, L10601, doi:10.1029/2011GL047361, 2011

Ricard, D., Minto, C., Jensen, O.P., Baum, J.K. 2011. Examining the status of commercially exploited marine species with the RAM Legacy Stock Assessment Database . Fish & Fisheries. DOI: 10.1111/j.1467-2979.2011.00435.x

Melnychuk, M.C., Essington, T.E., Branch, T.A.*, Heppell, S.S.*, Jensen, O.P.*, Link, J.S.*, Martell, S.J.D.*, Parma, A.M.*, Pope, J.G.*, Smith, A.D.M.* 2011. Can catch share fisheries better track management targets? Fish & Fisheries. DOI: 10.1111/j.1467-2979.2011.00429.x* Order of authors arranged alphabetically

Yan C, O Schofield, Z Dubinsky, D Mauzerall, P Falkowski, and M Gorbunov (2011) Photosynthetic energy storage efficiency in Chlamydomonas reinhardtii, based on microsecond photoacoustics.  Photosynthesis Research, 108(2-3), pp. 215-224.

Johnson-Worrell S. and M Gorbunov (2011). Effects of Sn on the Primary and Secondary Photosynthetic Reactions. - Int. J. of Sustainable Water and Environmental Systems, 2(No. 2): 97-102.

T.Gostev, F.Kuzminov, V.Fadeev, M.Gorbunov (2011) Aquatic Photosynthesizing Organisms Biophotonics: Fluorescent Diagnostic Methods. Photonics, 2: 72-81.

Ballantyne, F., Schofield, O., Levin, S. A. 2011. Featured Article: The emergence of regularity and variability in marine ecosystems: The combined role of physics, chemistry and biology .  Scientia Marina. 75(4): 719-731. doi: 10.3989/scimar.2011.75n4719

Barron, E. J., Fine, R. A., Schofield, O. 2011. Critical ocean infrastructure needs for the US in the year 2030 . Sea Technology. August: 17-21.

Weis, J. S. 2011. Invasion and predation in aquatic ecosystems . Current Zoology 57(5): 613-624.

Williams, K. H., Long, P. E., Davis, J. A., Wilkins, M. J., N'Guessan, A. L., Steefel, C. L., Yang, L., Newcomer, D., Spane, F. A., Kerkhof, L., McGuinness, L., Dayvault, R., Lovley, D. R. 2011. Acetate availbility and its influence on sustainable bioremediation of uranium-contaminate groundwater . Geomicrobiology Journal. 28: 519-539. doi.or/10.1080/01490451.2010.520074

Xu, Y., Chant, R., Gong, D., Castelao, R., Glenn, S., Schofield, O. 2011. Seasonal variability of chlorophyll a in the Mid-Atlantic Bight . Continental Shelf Research doi:10.1016/j.csr.2011.05.019

DiBacco, C., Fuchs, H. L., Pineda, J., Helfrich, K. 2011. Swimming behavior and velocities of barnacle cyprids in a downwelling flume . Marine Ecology Progress Series. 433: 131-148. doi: 10.3354/meps09186

Morley, A., Schulz, M., Rosenthal, Y., Mulitza, S., Paul, A., Ruhlem, C. 2011. Solar modulation of North Atlantic central water formation at multidecadal timescales during the late Holocene . Earth and Planetary Science Letters. 308: 161-171. doi:10.1016/j.epsl.2011.05.043

Roarty, H. J., Lemus, E. R., Handel, E., Glenn, S. M., Barrick, D. E., Isaacson, J. 2011. Performance evaluation of SeaSonde high-frequency radar for vessel detection . Marine Technology Society Journal. 45(3): 14-24.

Katz, M. E., Craer, B. S., Toggweiler, J. R., Esmay, G., Liu, C., Miller, K. G., Rosenthal, Y., Wade, B. S., Wright, J. D. 2011. Impact of Antarctic circumpolar current development on late paleogene ocean structure . Science. 332, 1076, DOI: 10.1126/science.1202122

Bricelj, V. M., Ford, S. E., Lambert, C., Barbou, A., Paillard, C. 2011. Effects of toxic Alexandrium tamarense on behavior, hemocycte responses and development of brown ring disease in Manila clams . Marine Ecology Progress Series. 430: 35-48. doi: 10.3354/meps09111

Able, K. W., Grothues, T. M., Rowe, P. M., Wuenschel, . J., Vasslides, J. M. 2011. Near-surface larval and juvenile fish in coastal habitats: Comparisons between the inner shelf and an estuary in the New York Bight during summer and fall . Estuaries and Coasts. 34: 726-738.DOI 10.1007/s12237-011-9399-1

Tchernov, D., Kvitt, H., Haramaty, L., Bibby, T. S., Gorbunov, M. Y., Rosenfeld, H., Falkowski, P. G. 2011. Apoptosis amd the selective survival of host animals following thermal bleaching in zooxanthellate corals . Proceedings of the National Academy of Sciences. doi/10.1073/pnas.1106924108

Nordstrom, K.F., N.L. Jackson, K.H. Korotky and J.A. Puleo. 2011. Aeolian transport rates across raked and unraked beaches on a developed coast. Earth Surface Processes and Landforms, 36: 779-789.

McCay, B. J., Brandt, S., Creed, C. F. 2011.  Human dimensions of climate change and fisheries in a coupled system: the Atlantic surfclam case .  ICES Journal of Marine Science.  doi: 10.1093/icesjms/fsr044.

Weis, J. S., Bergey, L., Reichmuth, J., Candelmo, A. 2011.Living in a contaminated estuary: Behavioral changes and ecological consequences for five species . BioScience: 61(5): 375-385.

Cermeno, P., Lee, J., Wyman, K., Schofield, O., Falkowski, P. 2011. Competitive dynamics in two species of marine phytoplankton under non-equilibrium conditions . Marine Ecology Progress Series. 429: 19-28. doi; 10.3354/meps09088

Pinsky, M. L., Jensen, O. P., Ricard, D., Palumbi, S. R. 2011. Unexpected patterns of fisheries collapse in the world's oceans . Proceedings of the National Academy of Sciences. www.pnas.org/cgi/doi/10.1073/pnas.1015313108

Salomon, A. K., Gaichas, S. K., Jensen, O. P., Agostini, V. N., Sloan, NA., Rice, J., McClanahan, T. R., Ruckelshaus, M. H., Levin, P. S., Dulvy, N. K., Babcock, E. A. 2011. Bridging the divide between fisheries and marine conservation science . Buelltin of Marine Science.  87: 251-274

Branch, T. A., Jensen, O. P., Ricard, D., Ye, Y., Hilborn, R. 2011. Contrasting global trends in marine fishery status obtained from catches and from stock assessments .Conservation Biollogy: DOI: 10.1111/j.1523-1739.2011.01687

Barron, E. J., Fine, R. A., Bellingham, J. G., Boss, E. S., Boyle, E. A., Edawards, M., Johnson, K. S., Kelley, D., Kite-Powell, H., Ramberg, S., Rudnick, D. L., Schofield, O., Tamburri, M. N., Wiebe, P. H., Wright, D. J. 2011. Critical infrastructure for Ocean Research and Societal Needs in 2030: Committee on an Ocean Infrastructure Strategy for U.S. Ocean Research in 2030. National Research Council. ISBN: 0-309-18604-8, 128 pages

McCay, Bonnie J., Wendy Weisman, and Carolyn F. Creed. 2011. Coping with Environmental Change:  Systemic Responses and the Roles of Property and Community in Three Fisheries .  Pp. 381-400 In World Fisheries: A Social-ecological Analysis, eds. Rosemary Ommer, Ian Perry, Philippe Cury and Kevern Cochrane. Oxford:Wiley-Blackwell.

Weis, Judith S. 2011 Do Fish Sleep? Fascinating Answers to Questions about fishes. Rutgers University Press

Reichmuth, J,M,  J. MacDonald, J. Ramiriz and J.S. Weis 2011. Fight or flight: an investigation of aggressive behavior and predator avoidance in two populations of blue crabs (Callinectes sapidus Rathbun) in New Jersey. Hydrobiologia 658: 173-182.

Weis, J.S. 2011. Tolerance and Biodiversity. In: Tolerance to Environmental Contaminants. Ed. C. Amiard-Triquet, P. Rainbow and M. Romeo.pp 249-264 CRC PressTaylor and Francis Group, Boca Raton FL

Anagnostou, E., Sherrell, R. M., Gargon, A., LaVigne, M., Field, P. M., McDonough, W. F. 2011. Seawater nutrient and carbonate ion concentrations recorded as P/Ca, Ba/Ca, and U/Ca in the deep-sea coral . Geochimica et Cosmochimica Acta. 75: 2529-2543. doi:10.1016/j.gca.2011.02.019

Rosenthal, Y., Morley, A., Barrs, C., Katz, M. E., Jorissen, F., Reichart, G., Oppo, D. W., Linsley, B. K. 2011. Temperature calibration of Mg/Ca ratios in the intermediate water benthic foraminifer Hyalinea balthica . Geochemisry, Geophysics, and Geosystems. 12(4): 1-17. doi:10.1029/2010GC003333 

Moeller, H. V., Johnson, M. D., Falkowski, P. G. 2011. Photoacclimation in the phototrophic marine ciliate Mesodinium rubrum (Ciliophora) Journal of Phycology DOI: 10.1111/j.1529-8817.2010.00954.x

Falkowski, P. G. 2011. The biological and geological contingencies for the rise of oxygen on Earth . Photosynthesis research 107: 7-10 doi: 10.1007/s11120-010-9602-4

Robock, A. 2011. Bubble, bubble, toil and trouble . Climatic Change DOI 10.1007/s10584-010-0017-1 

Kravitz, B., Robock, A., Boucher, O., Schmidt, H., Taylor, K. E., Stenchikov, G., Schulz, M. T he geoengineering model intercomparison project (GeoMIP) Atmospheric Science Letters. DOI: 10.1002/asl.316

Dorigo, W. A., Wagner, W., Hohensinn, R., Hahn, S., Paulik, C., Drusch, M., Mecklenburg, S., van Oevelen, P., Robock, A., Jackson, T. 2011. The international soil moisture network: A data hosting facility for global in situ soil moisture measurements .  Hydrology Earth System Science Discussion, 8, 1609–1663. doi:10.5194/hessd-8-1609-2011

Sertel, E., Ormeci, C., Robock, A. 2011. Modelling land cover change impct on the summer climate of the armara region, Turkey . International Journal of Global Warming. 3: 194-202

Glenn, S., Kohut, J., McDonnell, J., Seidel, D., Aragon, D., Haskins, T., Handel, E., Haldeman, C., Heifetz, I., Kerfoot, J., Lemus, E., Lictenwalder, S., Ojanen, L., Roarty, H., Atlantic Crossing Students, Jones, C., Webb, D., Schofield, O. 2011. The Trans-Atlantic Slocum glider expeditions: A catalyst for undergraduate participation in ocean science and technology. Marine Technology Society 45: 75-90. 

Bemis, K., Walker, J., Borgia, A., Turrin, B., Neri, M., Swisher, C. 2011.  The growth and erosion of cinde cones in Guatemala and El Salvador: Models and statistics . doi:10.1016/j.jvolgeores.2010.11.007

Karpati, A. S., Handel, S. N., Dighton, J., Horton, T. R. 2011. Quercus rubra-associated ectomycorrhizal fungal communities of disturbed urban sites and mature forests . Mycorrhiza. DOI 10.1007/s00572-011-0362-6

Hague, M. J., Ferrari, M. R., Miller, J. R., Patterson, D. A., Russells, G. L., Farrell, A. P., Hinchi, S. G. 2011. Modelling the future hydroclimatology of the lower Fraser River and its impacts on the spawning migration survival of sockeye salmon . Global Change Biology. 17: 87-98. doi: 10.1111/j.1365-2486.2010.02225.x

Yu, H., Y. He, X. Wang, Q. Zhang, Z. Bao and X. Guo. 2011. Polymorphism in a serine protease inhibitor gene and its association with disease resistance in the eastern oyster (Crassostrea virginica Gmelin) . Fish and Shellfish Immunology, doi:10.1016/j.fsi.2010.12.015.

Beck, M.W., R.D. Brumbaugh, L. Airoldi, A. Carranza, L.D. Coen, C. Crawford, O. Defeo, G.J. Edgar, B. Hancock, M.C. Kay, H.S. Lenihan, M.W. Luckenbach, C.L. Toropova, G. Zhang, and X. Guo. 2011. Oyster reefs at risk and recommendations for conservation, restoration, and management. BioScience, 61(2):107-116.

Parrish, C. C., Milke, L. M., Bricelj, M.V. 2011. Characterization of 4alpha-methyl sterols in Pavlova spp. and postlarval sea scallops, Placopecten magellanicus . Aquaculture. 311: 261-262. doi:10.1016/j.aquaculture.2010.11.003

Bernal, M., Stratoudakis, Y., Wood, S., Ibairriaga, L., Uriarte, A., Vales, L., Borchers, D. 2011.  A revision of daily egg production estimation methods, with application to Atlanto-Iberian sardine. 1. Daily spawning synchronicity and estimates of egg mortality .  ICES Journal of Marine Science. 68(3), 519–527. doi:10.1093/icesjms/fsr001

Bernal, M., Stratoudakis, Y., Wood, S., Ibairriaga, L., Uriarte, A., Vales, L., Borchers, D. 2011.  A revision of daily egg production estimation methods, with application to Atlanto-Iberian sardine. 2. Spatially and environmental explicit estimates of egg production .  ICES Journal of Marine Science. 68(3), 528-536. doi:10.1093/icesjms/fsr002

Kerkhof, L. J., Williams, K. H., Long, P. E., McGuinness, L. R. 2011. Phase preference by active, acetate-utilizing bacteria at the Rifle CO integrated field research challenge site . Environmental Science and Technology. dx.doi.org/10.1021/es102893r |Environ. Sci. Technol

Weyhenmeyer, G. A., Livingstone, D. M., Meilis, M., Jensen, O., Benson, B., Mahnison, J. J. 2011. Large geographical differences in the sensitivity of ice-covered lakes and rivers in the Northern Hemisphere to temperature changes . Global Change Biology 17: 268-275. 

Reinfelder, J. R. 2011. Carbon concentrating mechnisms in eukaryotic marine phytoplankton . Annual Reviews Marine Science. 3: 291-315.

Brucker, R.P., McManus, J., Severmeann, S., Owens J., Lyons, T. W. 2011. Trace metal enrichments in Lake Tanganyika sediments: Controls on trace metal burial in lacustrine systems . Geochimica et Cosmochimica Acta. 75: 483-499.

Jensen, O. P., Hansson, S., didrikas,m T., Stockwell, J. D., Hrabik, T. R., Axenrot, T., Kitchell, J. F. 2011. Foraging, bioenergetic and predation constraints on diel migration: Field observations and modelling of reverse migration by the young-of-the-year herring Clupea harengus .  Journal of Fish Biology. 78: 449-465.

Able, K. W., M. C. Sullivan, J. A. Hare, G. Bath-Martin, J. C. Taylor, and R. Hagan.  2011. Larval abundance of summer flounder (Paralichthys dentatus) as a measure of recruitment and stock status . Fisheries Bulletin 109:68-78.

Toth, J. L., A. A. Hohn, K. W. Able, and A. M. Gorgone. 2011. Patterns of seasonal occurrence, distribution and site fidelity of coastal bottlenose dolphins (Tursiops truncatus) in southern New Jersey, U.S.A . Marine Mammal Science 27(1):94-110.