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DMCS Academic Publications: 2015 PDF Print E-mail

Zhang, P., Haidvogel, D., Powell, E., Klinck, J., Mann, R., Castruccio, F., Munroe, D. 2015. A coupled physical and biological model of larval connectivity in Atlantic surfclams along the Middle Atlantic Bight. Part I: Model development and description. Estuarine Coastal and Shelf Science. 153: 38-53. doi:10.1016/j.ecss.2014.11.033

Narváez, D., D. Munroe, E. Hofmann, J. Klinck, E. Powell, R. Mann, and E. Curchitser. 2015. Long-term dynamics in Atlantic surfclam (Spisula solidissima) populations: The role of bottom water temperature. Journal of Marine Systems 141: 136-148. doi:10.1016/j.jmarsys.2014.08.007

McCauley, D.J., Pinsky, M., Palumbi, S.R., Estes, J.A., Joyce, F.H., Warner, R.R. 2015 Marine defaunation: Animal loss in the global ocean  Science 347, DOI: 10.1126/science.1255641

IMCS Academic Publications: 2014 PDF Print E-mail

Wang, X., Q. Li, J. Lian, L. Li, L. Jin, H. Cai, F. Xu, H. Qi, L. Zhang, F. Wu, J. Meng, H. Que, X. Fang, X. Guo and G. Zhang. 2014. Genome-wide and single-base resolution DNA methylomes of the Pacific oyster Crassostrea gigas provide insight into the evolution of invertebrate CpG methylation.  BMC Genomics, 15(1):1119.

Zhang, N., F. Xu & X. Guo. 2014. Genomic analysis of the Pacific oyster (Crassostrea gigas) reveals possible conservation of vertebrate sex determination in a Mollusc. G3: Genes| Genomes| Genetics, 4:2207-2217. doi:10.1534/g3.114.013904

Fellous, A., P. Favrel, X. Guo and G. Riviere. 2014. The Jumonji gene family in Crassostrea gigas suggests evolutionary conservation of Jmj-C histone demethylases orthologues in the oyster gametogenesis and development. Gene 538: 164-175.

Zhang, L., L. Li, Y. Zhu, G. Zhang and X. Guo. 2014. Transcriptome analysis reveals a rich gene set related to innate immunity in the eastern oyster (Crassostrea virginica). Marine Biotechnology, 16:17-33.

Yang, H., Y. Wang, X. Guo and T.R. Tiersch. 2014. Production of inbred larvae through self-fertilization using oocytes and cryopreserved sperm from the same individuals after sex reversal in eastern oyster Crassostrea virginica. Aquaculture Research, doi:10.1111/are.12371. 

Able, K. W., and F. J. Fodrie. 2015 Distribution and dynamics of habitat use by juvenile and adult flatfishes. Pp. 242-282 In: R. N. Gibson, R. D. M. Nash, A. J. Geffen, and H. W. Van der Veer (Eds.), Flatfishes: Biology and Exploitation (2nd edition), John Wiley and Sons Ltd., West Sussex, UK.

K.P. Crum, H.L. Fuchs, P.A.X. Bologna, and J.J. Gaynor. 2014. Model-to-data comparisons reveal influence of jellyfish interactions on plankton community dynamics. Marine Ecology Progress Series 517: 105-119.

Levitan, O., Dinamarca, J., Zelzion, E., Lun, D. S., Guerra, T. L., Kim K. M., Kim J., Van Mooy B. A. S., Bhattacharya, D., Falkowski, P. G. 2014. Remodeling of intermediate metabolism in the diatom Phaeodactylum tricornutum under nitrogen stress. Proceedings of the National Academies. 

Kustka, A. B., Milligan, A. J., Zheng, H., New, A. N., Gates, C., Bidle, K. D., Reinfelder, J. R. 2014. Low CO2 results in a rearrangement of carbon metabolism to support C4 photosynthetic carbon assimilation in Thalassiosira pseudonana . New Phytoplogist.  204: 507-520. doi: 10.1111/nph.12926

Schieler, B. M., Hale, E. A., Targett, T. E. 2014. Daily variation in ingress of fall-spawned larval fishes into Delaware Bay in relation to alongshore and along-estuary wind components . Estuarine, Coastal and Shelf Science. 151: 141-147.

Ghatak, D., E. Sinsky, and J. Miller, 2014.  Role of snow-albedo feedback in higher elevation warming over the Himalayas, Tibetan Plateau and Central Asia. Environmental Research Letters 9, doi:10.1088/1748-9326/9/11/114008. 

Chen,Y. C.M. Naud, I. Rangwala, C.C. Landry, and J.R. Miller, 2014.  Comparison of the sensitivity of surface downward longwave radiation to changes in water vapor at two high elevation sites.  Environmental Research Letters 9, doi:10.1088/1748-9326/9/11/114015 

Vetriani, C., Voordeckers, J. W., Crespo-Medina, M., O’Brien, C., Giovannelli, D. and Lutz, R. A. 2014. Deep-sea hydrothermal vent Epsiloproteobacteria encode for a conserved and widespread nitrate reduction pathway (Nap). ISME J. 8:1510-1521. doi:10.1038/ismej.2013.246. 

Pérez-Rodríguez, I., Bolognini, M., Ricci, J., Bini, E. and Vetriani, C. From deep-sea volcanoes to human pathogens: A conserved quorum sensing signal in EpsilonproteobacteriaISME J.,doi:10.1038/ismej.2014.214. 

Munroe, D. M., Klinck, J. M., Hofmann, E. E., Powell, E. N. 2014. A modelling study of the role of marine protected areas in metapopulation genetic connectivity in Delaware Bay oysters . Aquatic Conservation: Marine and Freshwater Ecosystems. 24: 645-666. DOI: 10.1002/aqc.2400 

Van De Plassche,  O., Wright, A. J., Horton, B. J., Engelharrt, S. E., Kemp, A. C., Mallinson, D., Kopp, R. E. 2014. Estimating tectonic uplift of the Cape Fear Arch (south-eastern United States) using reconstructions of Holocene relative sea level . Journal of Quanternary Science 29(8): 749-759. DOI: 10.1002/jqs.2746

Woodward, S. C., Rosenthal, Y., Miller, K. G., Wright, J. D., Chiu, B. K., Lawrence, K. T. 2014. Antarctic role in Northern Hemisphere glaciation .  

Xu, G., Jackson, D. R., Bemis, K. G., Rona, P. A. 2014. Time-series measurement of hydrothermal heat flux at the Grotto mound, Endeavour Segment, Juan de Fuca Ridge.  Earth and Planetary Science Letters. 404: 220-231. 

Pasotti, F., Manini, E., Giovannelli, D., Wolfl, A., Monien, D., Verleyen, E., Braeckman, U., Abele, D., Vanreusel, A. 2014. Antarctic shallow water benthos in an area of recent rapid glacier retreat . Marine Ecology. doi: 10.1111/maec.12179 

Narvaez, D. A., Munroe, D. M., Hofmann, E. E., Klinck, J. M., Powell, E. N., Mann, R., Curchitser, E. 2014. Long-term dynamics in Atlantic surfclam (Spisula solidissima) populations: The role of bottom water temperature . Journal of Marine Systems.  

Able, K. W., Lopez-Duarte, P. C., Fodrie, J. F., Jensen, O. P., Martin, C. W., Roberts, B. J., Valenti, J., O'Conner, K., Halbert, S. C. 2014. Fish assemblages in Louisiana salt marshes: Effects of the Macondo oil spill. Estuaries and Coasts DOI 10.1007/s12237-014-9890-6

Schofield, O., Kohut, J., Saba, G., Yi, X., Wilkin, J., Glenn, S. 2014. Oceans: Observation and Prediction. In Encyclopedia of Natural Resources: Water. Taylor and Francis: NY, p. 802-807. doi/book/10.1081/E-ENRW

Pilarczyk, J. E., Dura, T., Horton, B., Engelha, S. E. 2014. Microfossils from coastal enironments as indicators of paleo-earthquakes, tsunamis and stotrms . Palaeography, Paleoclimatology, Paleoecology. 

Bricelji, M. V., Cembella A. D., Laby, D. 2014. Temperature effects on kinetics of paralytic shellfish toxin elmination in Atlantic surfclams, Spisula solidissma. Deep-Sea Research Reearch II.  

Fodrie, J. F., Able, K. W., Galvez, F., Heck, K. L., Jensen, P. P., Lopez-Duarte, P. C., Martin, C. W., Turner, E. R., Whitehead, A. 2014. 2014. Intregrating organismal and population responses of esturarine fishes in Macondo spill research . BioScience. 64(9):778-788. doi:10.1093/biosci/biu123  

Rolton, A.,  Vignier, J., Soudant, P., Shumway, S. E., Bricelji, M. V., Volety, A. 2014. Effects of the red tide dinoflaggelate, Crassostrea virginica and norther quahog Mercenaria mercenaria . Aquatic toxicology. 155: 196-206.  

Mass, T., Drake, J. L., Peters, E. C., Jiang, W., Falkowski, P. G. 2014. Immunolocalization of skeletal matrix proteins in tissue and mineral of the coral Stylophora pistillata . Proceedings of the National Academies of Science. 

Constable, A., Costa, D., Murphy, E., Hofmann, E., Schofield, O., Press, A., Johnson, N. M., Newman, L. 2014. Assessing status and change in Southern ecosystems. In De Broyer C., Koubbi P., Griffiths, H. J., Raymond, B., Udekem d'Acoz C. d' (eds). Biogeographic Atlas of the Southern Ocean. Scientific Committee on Antarctic Research, Cambridge, pp. 404-407. 

Foflonker, F., Price, D. C., Qiu, H., Palenik, B., Wang, S., Bhattacharya, D. 2014. Genome of the halotolerant green alga Picochlorum sp. reveals strategies for thriving under fluctuating environmental conditions. Environmental Microbiology. doi:10.1111/1462-2920.12541  

Cheng, S., Price, D. C., Karkar, S., Bhattacharya, D. 2014. Exploring biotic interactions within protist cell populations using network methods. Eukaryotic Microbiobiology. DOI: 10.1111/jeu.12113 

Babila, T., Rosenthal, Y., Conte, M. H. 2014. Evaluation of the biogeochemical controls on B/Ca of Globigerinoides ruber white from the Oceanic Flux Program, Bermuda. Earth and Planetary Science Letters 404: 67-76. 

Liu, Z., Zhu, J., Rosenthal, Y., Zhang, X., Otto-Bliesner, B. L., Timmermann, A., Smith, R S., Lohmann, G., Zheng, W., Timm, O. E. 2014. The holocene temperature conundrum . Proceedings of the National Academy of Sciences. 

Tuorto, S., Taghon, G. L. 2014. Rates of benthic bacterivory of marine ciliates as a function of prey concentration. Journal of Experimental Marine Biology. 460: 129134.

Free C. M., Landis R. M. , Grogan J., Schulze M. D., Lentini M., Dünisch O. 2014.Management implications of long-term tree growth & mortality rates: a modeling study of big-leaf mahogany (Swietenia macrophylla) in the Brazilian Amazon . Forest Ecology & Management 330: 46–54. 

Hinckley, E.S., R.T Barnes, S.P. Anderson, M.W.Williams, and S.M. Bernasconi 2014. Nitrogen retention and transport differ by hillslope aspect at the rain-snow transition of the Colorado Front Range. Journal of Geophysical Research- Biogeosciences. DOI: 10.1002/2013JG00258

Dubois, N., Oppo, D. W., Galy, V. V., Mohtadl, M., van der Kaars, S., Tiernery, J. E., Rosenthal, Y., Eglinton, T. I., Luckge, A., Linsley, B. K. 2014. Indonesian vegetation response to changes in rainfall seasonality over the past 25,000 years. Nature Geoscience. doi: 10.1038/NGEO2182

Saba, G. K., Fraser, W. R., Saba, V. S., Iannuzzi, R. A., Coleman, K. A., Doney, S. C., Ducklow, H., Martinson, D. G., Miles, T. N., Patterson-Fraser, D. L., Stammerjohn, S. E., Steinbergy, D. K., Schofield, O. 2014. Winter and spring controls on the summer food web of the coastal West Antarctic Peninsula . Nature Communications 5:4318 doi: 10.1038/ncomms5318 

Lathrop, R. G., Jr., S. M. Haag, D. Merchant, M. J. Kennish, and B. Fertig. 2014. Comparison of remotely-sensed surveys vs. in situ plot-based assessments of sea grass condition in Barnegat Bay-Little Egg Harbor, New Jersey USA. Journal of Coastal Conservation. 18: 299-308 doi:10.1007/s11852-014-0319-y. 

Kopp, R. E., Horton, R. M., Little, C. M., Mitrovica, J. X., Oppenheimer, M., Rasmussen, D. J., Strauss, B. H., Tebaldi, C. 2014. Probabilistic 21st and 22nd century sea-level projections at a global network of tide gauge sites. Earth's Future. doi:10.1002/2014EF000239 

Free, C. M., Jensen, O. P., Mason, S. A., Eriksen, M., Williamson, N. J., Boldgiv, B. 2014. High-levels of microplastic pollution in a large, remote, mountain lake . Marine Pollution Bulletin 

Sipler, R. E., McGuinness, L. R., Kirkpatrick, G. J., Kerkhof, L. J., Schofield, O. M. 2014. Bacteriocidal effects of brevetoxin on natural microbial communities . Harmful Algae.  

Lathrop, R. Auermuller, L., Trimble, J., Bognar, J. 2014. The application of WebGIS tools for visualizing coastal flooding vulnerability and planning for resiliency: The New Jersey experience . ISPRS International Journal of Geo-Information. 3: 408-429; doi:10.3390/ijgi3020408  

Colombo, M. J., Ha, J., Reinfelder, J. R., Barkay, T., Yee, N. 2014. Oxidation of Hg(0) to Hg(II) by diverse anaerobc bacteria . Chemical Geology. 363: 334-340. 

Able, K. W., Grothues, T. M., Rackovan, J. L., Buderman, F. E. 2014. Application of mobile dual-frequency identification sonar (DIDSON) to fish in estuarine habitats . Northwestern naturalist. 21(2): 192-209. 

Hilborn, R. D. J. Hively, O.P. Jensen, and T. A. Branch. 2014. The dynamics of fish populations at low abundance and prospects for rebuilding and recovery.  ICES Journal of Marine Science. doi:10.1093/icesjms/fsu035 

Foley, P. and B. McCay. 2014. Certifying the commons: eco-certification, privatization, and collective action. Ecology and Society 19 (2): 28. [online] URL:

Micheli, F., Giulio De Leo, Sheste, G., Martone R. G., Lluch-Cota S., Butner C., Crowder, L. B., Fujita R., Gelcich S., Jain M., Lester S. E., McCay B., Pelc R., Sáenz-Arroyo A. 2014.  A system-wide approach to supporting improvement in seafood production practices and outcomes.  Frontiers in Ecology and the Environment 2014; doi:10.1890/110257. 

Harel, A., Bromberg, Y., Falkowski, P. G., Bhattacharya, D. 2014. Evolutionary history of redox metal-binding domains across the tree of life . Proceedings of the National Academy of Sciences. 

Lathrop, R., Auermuller, L., Trimble, J., Bignar, J. 2014. The application of WebGIS tools for visualizing coastal flooding vulnerability and planning for resiliency: The New Jersey experience . ISPRS International Journal of Geo-Informatics. doi:10.3390/ijgi3020408 

Pilarczyk, J. E., Goff, J., Mountjoy, J., Lamarche, G., Pelletier, B., Horton, B. P. 2014. Sediment transport trends from a tropical Pacific lagoon as indicated by Homotrema rubra taphonomy: Wallis Island, Polynesia. Marine Micropaloentology 109: 21-29. 

Brown, A. L., Reinhardt, E. G., van Hengstum, P. J., Pilarczyk, J. E. 2014. A coastal Yucatan sinkhole records intense hurricane events. Journal of Coastal Research. 30(2): 418-428. doi: 10.2112/JCOASTRES-D-13-00069.1 

Horton, B. P., Rahmstorf, S., Engelhart, S. E., Kemp, A. C. 2014. Expert assessment of sea-level rise by AD 2100 and AD 2300 . Quaternary Science Reviews. 

Nikitina, D. L., Kemp, A., Horton, B. P., Vane, C. H. 2014. Storm erosion during the past 2000 years along the north shore of Delaware Bay, USA . Geomorpology.

Jones, K. M. M. M., McGrath, P. E., Able, K. W. 2014. White perch Morone americana (Gmelin, 1789) habitat choice and movements: Comparisons between Phragmites-invaded and Spartina reference marsh creeks based on acoustic telemetry . Journal of Experimental Marine Biology. 455 (2014) 1421.

Aslan, C., M., Pinsky, M. L., Ryan, M.,  Souther, S., Terrell, K. 2014. Cultivating creativity in conservation science.Conservation Biology 28(2): 345-353 doi:10.1111/cobi.12173 

Kennish, M. J., M. J. Brush, and K. A. Moore (eds.). 2014. Drivers of Change in Shallow Coastal Photic Systems. Estuaries and Coasts, Volume 37, Supplement 1, 242 pp. ISSN 1559-2723.

Kennish, M. J., M. J. Brush, and K. A. Moore. 2014. Drivers of change in shallow coastal photic systems:  an introduction to a special issue. Estuaries and Coasts 37, (Suppl. 1): S3-S19. doi:10.1007/s1223701497794 

Fertig, B., M. J. Kennish, G. P. Sakowicz, and L. K. Reynolds. 2014. Mind the data gap: identifying and assessing drivers of changing eutrophication condition. Estuaries and Coasts 37, (Suppl. 1): S198-221. doi:10.1007/s1223701397465 

Smith, M. A., Walker, N. J., Free, C. M., Kirchhoff, M. J., Drew, G. S., Warnock, N., Stenhouse, I. J. 2014. Identifying marine Important bird areas using at-sea survey data . Biological Conservation 172: 180-189. 

Kennish, M. J., Spahn, A., Sakowicz, G. P. 2014. Sentinel site development of a major salt marsh system in the Mid-Atlantic region (USA). Open Journal of Ecology. 44: 77-86.

Seyler, L. M.,  McGuinness, L. M., Kerkhof, L. J. 2014.  Crenarchaeal heterotrophy in salt marsh sediments .  ISME J.  doi:10.1038/ismej.2014.15 

Galaasen, E. V.,  Ninnemann, U. S., Irvali, N., Kleiven, H. F., Rosenthal, Y., Kissel, C., Hodell, D. A. 2014. Rapid reductions in North Atlantic deep water during the peak of the late interglacial period . Science. 10.1126/science.1248667  Science News/Views synposis

Andrianasolo, E. H., Haramaty, L., White, E., Lutz, R., Falkowski, P. G. 2014. Mode of action of diterpene and characterization of related metabolites from the soft coral, Xenia elongata . Marine Drugs.12, 1102-1115; doi:10.3390/md12021102  

Grogan, J., Landis, M. R., Free, C. M., Schulze, M. D., Lentini, M., Ashton, M. S. 2014. Big-leaf mahogany Swietenia macrophylla population dynamics and implications for sustainable management. Journal of Applied Ecology 51: 664-674. doi:10.1111/1365-2664.12210. June 2014 Editor's Choice .

de Bruyn, M., M. L. Pinsky, B. Hall, P. Koch, C. Baroni, and A. R. Hoelzel. 2014.Rapid increase in southern elephant seal genetic variation after a founder event. Proceedings of the Royal Society B: Biological Sciences 281: 20133078 doi: 10.1098/rspb.2013.3078

Pinsky, M. L. and S. R. Palumbi (2014) Meta-analysis reveals lower genetic diversity in overfished populations. Molecular Ecology 23: 29-39 doi: 10.1111/mec.12509 Cover article. News & Views perspective by Allendorf et al.

Nelson, E., P. Kareiva, M. Ruckelshaus, K. Arkema, G. Geller, E. Girvetz, D. Goodrich, V. Matzek, M. Pinsky, W. Reid, M. Saunders, D. Semmens, and H. Tallis. 2013. Climate change's impact on key ecosystem services and the human well-being they support in the United States. Frontiers in Ecology and Evolution 11(9): 483-493 doi: 10.1890/120312 

Jurisa, Joseph T., Robert J. Chant, 2013: Impact of Offshore Winds on a Buoyant River Plume System. J. Phys. Oceanogr., 43, 2571–2587. doi: 

Hay, C., Mitrovica, J. X., Gomez, N., Creveling, J. R., Austermann, J., Kopp, R. E. 2014. The sea-level fingerprints of ice-sheet collapse during interglacial periods . Quaternary Science Reviews. 87: 60-69.

Rose, S.L., J. Fulton, C.M. Brown, F. Natale, B.A.S. Van Mooy, and K.D. Bidle. 2014. Isolation and characterization of lipid rafts in Emiliania huxleyi: a role for membrane microdomains in host-virus Interactions. Environ. Microbiol. (doi:10.1111/1462-2920.12357)

Fulton, J.M, H.F. Fredricks, K.D. Bidle, A. Vardi, B.J. Kendrick, G.R. DiTullio and B.A.S. Van Mooy. 2014 Novel molecular determinants of viral susceptibility and resistance in the lipidome of Emiliania huxleyi. Environ. Microbiol. (doi:10.1111/1462-2920.12358).


IMCS Academic Publications: 2013 PDF Print E-mail

Colombo, M. J., Ha, J., Reinfelder, J. R., Barkay, T., Yee, N. 2013. Anaerobic oxidation of Hg(0) and methylmercury formation by Desulfovibrio desulfuricans ND132 . Geochmica et Cosmochimica Acta. 112:166-177.

Reinfelder, J. 2013. Sea Changes. Nature 500: 533. 

Traique, Q., Burger, J., Reinfelder, J. R. 2013. Relative importance of burrow sediment and porewater to the accumulation of trace metals in the clam Amiantic umbonella. Arch Environ Contam Toxicol 65:89–97 DOI 10.1007/s00244-013-9874-8 

McCay, Bonnie J., Fiorenza Micheli, German Ponce-Diáz, Grant Murray, Geoff Shester, Saudiel Ramirez-Sanchez, and Wendy Weisman. 2013. Cooperatives, concessions, and co-management on the Pacific coast of Mexico. Marine Policy 44: 49-59. 

Kuang, D., Curchister, E. N. 2013. 2013. Gulf Stream eddy characteristics in a high-resolution model.  Journal of Geophysical Research. 118, 4474-4487. doi: 10.1002/jgrs.20318. 

Bricelji, M. V., Cembella, A. D., Laby, D. 2013. Temperature effects on kinetics of papralytic shellfish toxin elimination in Atlantic surfclams, Spisula solidissima . Deep-Sea Research II.  

Muller-Karger, F., Roffer, M., Walker, N., Oliver, M., Schofield, O., Abbott, M., Graber, H., Leben, R., Goni, G. 2013. Satellite remote sensing in support of an integrated ocean observing system . Geoscience and Remote Sensing Magazine, IEEE. 1:8-14. doi:10.1109/MGRS.2013.2289656 

Guevelou, E., Huvet, A., Sussarellu, R., Milan, M., Guo, X., Li, L. Zhang, G., Quillien, V., Daniel, J., Quere, C., Boudry, P. Corporeau, C. 2013. Regulation of a truncated isoform of AMP-activated protein kinase alpha (AMPK-alpha) in response to hypoxia in the muscle of Pacific oyster Crassostrea gigas .  Journal of Compartive Physiology B. DOI 10.1007/s00360-013-0743-6

Wang, H., Qian, L., Wang, A., Guo, X. 2013. Occurrence and distribution of Crassostrea sikamea (Amemiya 1928) in China . BioOne. 

Yang, H., Supan, J., Guo, X., Tiersch, T. R. 2013. Nonlethal sperm colleclion and cryopresevation in the Eastern Oyster Crassostrea virginica .  BioOne

Zhang, L., Zhu, Y., Zhang, G., Guo, X. 2013. Transcriptome analysis reveals a rich gene set related to innate immunity in the Eastern Oyster (Crassostrea virginica) . Marine Biotechnology. DOI 10.1007/s10126-013-9526-z 

Iacchei, M., Ben-Horin, T., Selkoe, K. A., Bird, C. E., Garcia-Ridriguez, F. J., Toonen, R. J. 2013. Combined analyses of kinship and Fst suggest potential drivers of chaotic genetic patchiness in high gene-flow populations . Molecualr Ecology. 22: 3476-3494. 

Lafferty, K. D., Ben-Horin, T. 2013. Abalone farm discharges the withering syndrome pathogen into the wild. Frontiers in Microbiology. doi: 10.3389/fmicb.2013.00373  

Bar-Zeev, E., I. Avishay, K.D. Bidle and I. Berman-Frank. 2013. Programmed cell death in the marine cyanobacteriumTrichodesmium mediates carbon and nitrogen export. ISME Journal 7(12): 2340-2348.

Read, B., et al. (total of 73 authors). 2013. Pan genome of the phytoplankton Emiliania underpins its global distribution. Nature. 499:209-213.

Seth-Pasricha, M., K.A. Bidle, and K.D. Bidle. 2013. Specificity of archaeal caspase activity in the extreme halophile Haloferax volcanii. Environ. Microbiol. Reports 5(2): 263-271. 

Musumeci, V. L., K. W. Able, M. C. Sullivan, and J. M. Smith. 2013. Estuarine predator-prey interactions in the early life history of two eels (Anguilla rostrata and Conger oceanicus). Environmental Biology of Fishes DOI 10.1007/s10641-013-0194-7.

Wuenschel, M. J., K. W. Able, J. M. Vasslides and D. M. Byrne. 2013. Habitat and diet overlap of 4 piscivorous fishes: variation on the inner continental shelf off New Jersey. Fishery Bulletin 111:352-369.

Barnes, R. T., Williams, M. W., Parman, J. N., Hill, K., Caine, N. 2013. Thawing glacial and permafrost features contribute to nitrogen export from Green Lakes Valley, Colorado front range, USA . Biogeochemistry. DOI 10.1007/s10533-013-9886-5 

Kopp, R. E., Simons, F. J., Mitrovica, J. X., Maloof, A. C., Oppenheimer, M. 2013. A probabilistic assessment of sea level variations within the last interglacial stage . Geophysical Journal International 191: 711-716. doi: 10.1093/gji/ggt029 

Lavelle, J. W., Di Iorio, D., Rona, P. 2013. A turbulent convection model with an observational context for a deep-sea hydrothermal plume in a time-variable cross flow . Journal of Geophysical Research. Oceans. doi:10.1002/2013JC009165 

Powers, S. P., Hernandez, F. J., Condon, R.H., Drymon, M. J., Free, C. M. 2013. Novel pathways for injury from offshore oil spills: Direct, sublethal and indirect effects of Deepwater Horizon oil spill on pelagic Sargassum communities . PLOS One. 8(9): e74802. doi:10.1371/journal.pone.0074802 

Miller, K.G., Kopp, R.E., Horton, B.P., Browning, J.V., Kemp, A.C., 2013. A geological perspective on sea-level rise and its impacts along the U.S. mid-Atlantic coast, Earth's Future, doi:10.1002/2013EF000135 

Horton, B. J., Rahmstorf, S., Engelhart, S. E., Kemp, A. C. 2013. Expert assessment of sea-level rise by AD 2100 and AS 2300 .  Quaternary Science Reviews.

Miskewitz, R., Uchrin, C. 2013. In-stream dissolved oxygen impacts and sediment oxygen demand resulting from combined sewer overflow discharges . Journal of Environmental Enginnering.  doi:10.1061/(ASCE)EE.1943-7870.000739

Sikes, E.L., Medeiros, P. M., Augustinus, P., Wilmshurst, J. M., Freeman, K. R. 2013. Seasonal variations in aridity and temperature characterize changing climate during the last deglaciation in New Zealand . Quaternary Science Reviews. 

Munroe, D. M., Hoffmann, E. E., Powell, E. N., Kilnck, J. M. 2013. How do shellfisheries influence genetic connectivity in metapopulations? A modeling study examining the role of lower size limits in oyster fisheries . Candanian Journal Fishery Aquatic Science. 

Munroe, D., Tabatabai, A., Burt, L., Bushek, D., Powell, E. N., Wilkin, J. 2013. Oyster mortality in Delaware Bay: Impacts and recovery from Hurricane Irene and Tropical Storm Lee . Estuarine, Coastal and Shelf Science. 

Able, K. W., Grothues, T. M., Turnure, J. T., Malone, M. A., Henkes, G. A. 2013. Dynamics of residency and egress in selected estuarine fishes: evidence from acoustic telemetry . Environmental Biology of Fishes. 97:91-102 DOI: 10.1007/s10641-013-0126-6

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Guerra, L. T., Levitan, O., Frada, M. J., Sun, J. S., Falkowski, P. G., Dismukes, C. G. 2013. Regulatory branch points affecting protein and lipid biosynthesis in the diatom Phaeodactylum tricornutum.  Biomass & Bioenergy.

Kemp, A. C., Horton, B. P., Vane, C. H., Bernhardt, C. E., Corbett, D. R., Engelhart, S. E., Anisfeld, S. C., Parnell A. C., Cahill, N. 2013. Sea-level change during the last 2500 years in New Jersey , USA. Quaternary Science Reviews. 81: 90-104.  

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Sailley, S. F., Ducklow, H. W., Moeller, H. V., Fraser, W. R., Schofield, O., Steinberg, D. K., Garzio, L. M., Doney, S. C. 2013. Carbon fluxes and pelagic ecosystem dynamics near two western Antarctic Peninsula Adelie penguin colonies: An inverse model approach. Marine Ecology Progress Series. 492: 253-272. doi: 10.3354/meps10534 

Falkowski P., Jelen B.: Microbial Genomes That Drive Earth's Biogeochemical Cycles. In: Nelson K. (Ed.) Encyclopedia of Metagenomics: SpringerReference ( Springer-Verlag Berlin Heidelberg, 2013. DOI: 10.1007/SpringerReference_367744 2013-10-20 09:03:17 UTC 

Harrold, J. W., Woronowicz, K., Lamptey, J. l., Awong, J., Baird, J., Moshar, A., Vittadello, M., Falkowski, P. G., Niederman, R. A. 2013. Functional interfacing of Rhodospirillum rubrum chrmatophores to a conducting support for capture and conversion of solar energy . The Journal of Physical Chemistry. 

Pinsky, M. L., B. Worm, M. J. Fogarty, J. L. Sarmiento, and S. A. Levin. 2013. Marine taxa track local climate velocities. Science. 341: 1239-1242 doi:10.1126/science.1239352 

Mills, S. W., Mullineaux, L. S., Beaulieu, S. E., Adams, D. K. 2013. Persistent effects of disturbance on larval patterns in the plankton after an eruption on the East Pacific Rise. Marine Ecology Progress Series. doi: 10.3354/meps10463 

Xu, G., Jackson, D. R., Bemis, K. G., Rona, P. A. 2013. Observations of the volume flux of a seafloor hydrothermal plume using an acoustic imaging sonar .  Geochemistry Geophysics Geosystems 14(7): doi: 10.1002/ggge.20177

Vane, C. H., Kim, A. W., Moss-Hayes, V., Snape, C. E., Diaz, M. C., Khan, N. S., Engelhardt, S. E., Horton, B. P. 2013. Degradation of mangrove tissues by arboreal termites (Nasutitermes acajutlae) and the role in the mangrove C cycle (Puerto Rico): Chemical characterization and organic matter provenance using bulk 13C, C/N, alkaline CuO oxidation-GC/MS, and solid state 13C NMR . Geochemistry Geophysics Geosystems 14(8): doi: 10.1002/ggge.20194 

Kemp, A. C., Telford, R. J., Horton, B. J., Anisfeld, S. C., Sommerfield, C. K. 2013. Reconstructing Holocene sea level using salt-march foraminifera and transfer functions: lessons from New Jersey, USA . Journal of Quaternary Science. 28(6):617-629. DOI: 10.1002/jqs.2657 

Huan Qiu, Hwan Su Yoon, and Debashish Bhattacharya. 2013. Algal endosymbionts as vectors of horizontal gene transfer in photosynthetic eukaryotes. Frontiers in Plant Science doi: 10.3389/fpls.2013.00366

Depriest MS, Bhattacharya D, López-Bautista JM. 2013. The plastid genome of the red macroalga Grateloupia taiwanensis (Halymeniaceae). PLoS One. 2013 Jul 19;8(7):e68246.

Skorupa DJ, Reeb V, Castenholz RW, Bhattacharya D, McDermott TR. 2013. Cyanidiales diversity in Yellowstone National Park. Letters in Applied Microbiology Jul 19. doi: 10.1111/lam.12135. [Epub ahead of print]

Shoguchi E, Shinzato C, Kawashima T, Gyoja F, Mungpakdee S, Koyanagi R, Takeuchi T, Hisata K, Tanaka M, Fujiwara M, Hamada M, Seidi A, Fujie M, Usami T, Goto H, Yamasaki S, Arakaki N, Suzuki Y, Sugano S, Toyoda A, Kuroki Y, Fujiyama A, Medina M, Coffroth MA, Bhattacharya D, Satoh N. 2013. Draft assembly of the Symbiodinium minutum nuclear genome reveals dinoflagellate gene structure. Current Biology 23:1399-1408.

Bhattacharya D, Price DC, Chan CX, Qiu H, Rose N, Ball S, Weber AP, Cecilia Arias M, Henrissat B, Coutinho PM, Krishnan A, Zäuner S, Morath S, Hilliou F, Egizi A, Perrineau MM, Yoon HS. 2013. Genome of the red alga Porphyridium purpureum. Nature Communications 4:1941. 

Jeferson Gross, Sana Wajid, Dana C. Price, Ehud Zelzion, Junyi Li, Cheong Xin Chan, Debashish Bhattacharya. 2013. Evidence for widespread exonic small RNAs in the glaucophyte alga Cyanophora paradoxa. PLoS ONE 8(7): e67669.  

Tuorto, S. J., Darias, P., McGuinness, L. R., Panikov, N., Zhang, T., Haggblom, M. M., Kerkhof, L. J. 2013. Bacterial genome replication at subzero temperatures in permafrost. The ISME Journal. doi:10.1038/ismej.2013.140 

Gerbi, G. R. J. Chant, J L. Wilkin,  2013.  Breaking Surface wave effects on river plume dynamics during upwelling favorable winds . Journal of Physical Oceanography  23:1959-1980 DOI: 10.1175/JPO-D-12-0185.1 

Weis, J. S.  2013. Physiological, Developmental and Behavioral Effects of Marine Pollution. Springer Verlag, New York. XVII, 452 p.

Wiedenmann, J., Wilberg, M. J., Miller, T. J. 2013. An evaluation of harvest control rules for data-poor fisheries . North Amercian Journal of Fisheries Management.  33:4, 845-860.

Wilkin, J. L., Hunter, E. J. 2013. An assessment of the skill of real-time models of Mid-Atlantic Bight continental shelf circultation. Journal of Geophysical Research. 118. 1-15. doi:10.1002/jgrc.20223  

Fuchs, H. L., Reidenbach, M. A. 2013. Biophysical constraints on optimal patch lengths for settlement of a reef-building bivalve. Plos ONE 8(8): e71506. doi:10.1371/journal.pone.0071506 

Aristizabal, M.  and R.J. Chant. (2013), A Numerical Study of Salt Fluxes in Delaware Bay Estuary, Journal of Physical Oceanography,DOI. Aug2013, Vol. 43 Issue 8, p1572-1588. DOI: 10.1175/JPO-D-12-0124.1 

Fraser, W.R., D.L. Patterson-Fraser, C.A. Ribic, O. Schofield, and H. Ducklow. 2013. A nonmarine source of variability in Adélie penguin demography. Oceanography  26(3):207–209, 

Schofield, O., H. Ducklow, K. Bernard, S. Doney, D. Patterson-Fraser, K. Gorman, D. Martinson, M. Meredith, G. Saba, S. Stammerjohn, and others. 2013. Penguin biogeography along the West Antarctic Peninsula: Testing the Canyon Hypothesis with Palmer LTER observations . Oceanography  26(3):204–206, 10.5670/oceanog.2013.63. 

Ducklow, H.W., W.R. Fraser, M.P. Meredith, S.E. Stammerjohn, S.C. Doney, D.G. Martinson, S.F. Sailley, O.M. Schofield, D.K. Steinberg, H.J. Venables, and C.D. Amsler. 2013. West Antarctic Peninsula: An ice-dependent coastal marine ecosystem in transition . Oceanography  26(3):190–203, 

Vert Pre, K.A., R.O. Amoroso, O.P. Jensen, R. Hilborn. 2013. The frequency and intensity of productivity regime shifts in marine fish stocks. Proceedings of the National Academy of Sciences. 110:1779-1784. 

Kemp, A., Horton, B. P. 2013. Contribution of relative sea-level rise to historical hurricane flooding in New York City.  Journal of Quaternary Science. doi: 10.1002/jqs.2653 

Ghatak, D., Miller, J. 2013. Implications for Arctic amplification of changes in the strength of the water vapor feedback. Journal of Geophysical Research: Atmospheres 118, 110, doi:10.1002/jgrd.50578

Engelhart, S. E., Horton, B. P., Nelson, A. R., Hawkes, A. D., Witter, R. C., Wang, K., Wang, P.-L., Vane, C. H. 2013. Testing the use of microfossils to reconstruct great earthquakes at Cascadia.  Geology. doi:10.1130/G34544.1 

Biesinger, Z., Bolker, B. M., Marcinek, D., Grothues, T. M., Dobarro, J. A., Lindberg, W. J. 2013. Testing an autonomous acoustic telemetry positioing system for fine-scale space use in marine animals.  Journal of Experimental Marine Biology and Ecology. 448: 46-53. 

Kopp, R. E. 2013. Does the mid-Atlantic United States sea-level acceleration hot spot reflect ocean dynamic variability?  Geophysical Research Letters. 40, 1-5, doi:10.1002/grl.50781

D.F. Boesch, L.P. Atkinson, W.C. Boicourt, J.D. Boon, D.R. Cahoon, R.A. Dalrymple, T. Ezer, B.P. Horton, Z.P. Johnson, R.E. Kopp, M. Li, R.H. Moss, A. Parris, C.K. Sommerfield 2013. Updating Maryland’s Sea-level Rise Projections. Special Report of the Scientific and Technical Working Group to the Maryland Climate Change Commission . Cambridge, MD: University of Maryland Center for Environmental Science. 

Wang, P., Engelhart, S. E., Wang, K., Hawkes, A. D., Horton, B. P., Nelson, A. R., Witter, R. C. 2013. Heterogeneous rupture in the great Cascadia earthquake of 1700 inferred from coastal subsidence estimates. Journal of Geophysical Research, Solid Earth. VOL. 118, 114, doi:10.1002/jgrb.50101

Horton, B. J., Engelhart, S. E., Hill, D. F., Kemp, A. C., Nikitina, D., Miller, K. G., Peltier, R. W. 2013. Influence of tidal-schange and sediment compaction on Holocene relative sea-level change in New Jersey, USA . Journal of Quaternary Science 28(4): 403-411. DOI: 10.1002/jqs.2634 

Wilberg, M. J., Wiedenmann, J. R., Robinson, J. M. 2013. Sustainable exploitation and management of autogenic ecosystem engineers: Application to oysters in Chesapeake Bay. Ecological Application 23(4): 766-776.  

Rangwala, I., Sinsky, E., Miller, J. R. 2013. Amplified warming projections for high altitude regions of the northern hemisphere mid-latitudes from CMIP5 models Environmental Research Letters 8 024040 doi:10.1088/1748-9326/8/2/024040

Kim, J. D., Senn, S., Harel, A., Jelen, B. L., Falkowski, P. G. 2013. Discovering the electronic circuit diagram of life: Structural relatiuonships among transition metal binding sites in oxidoreductases. Philophical Transactions of the Royal Sociey.  368: 20120257.

Oliver, M. J.,m Breece, M. W., Fox, D. A., Haulsee, D. E., Kohut, J. T., Manderson, J., Savoy, T. 2013. Shrinking the haystack: using an AUV in an integrated ocean observatory to map Atlantic sturgeon in the coastal ocean . Fisheries.  38:5, 210-216.

Provost, M. 2013. Tagging black sea bass for sex change data . Fisheries.  38:5, 227-227.

Mass, T., Drake, J., Haramaty, L., Kim, J. D., Zelslon, E., Bhattacharya, D., Falkowski, P. G. 2013. Cloning and Characterization of four novel coral acid-rich proteins that precipitate carbonates in vitro . Current Biology

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Kim, J. D., Yee, N., Nanda, V., Falkowski, P. G. 2013. Anoxic photochemical oxidation of siderite generates molecular hydrogen and iron oxides . Proceedings of National Academy of 

Sipler, R.E., D.A. Bronk, S.P. Seitzinger, R.J. Lauck, L.R. McGuinness, G.J. Kirkpatrick, C.A. Heil, L.J.Kerkhof, O.M. Schofield. 2013. Trichodesmium-derived dissolved organic matter is a source of nitrogen capable of supporting the growth of toxic red tide Karenia brevis . Marine Ecology Progress Series 483: 31-45. 

Kohut, J., Hunter, E., Huber, B. 2013. Small-scale variability of the cross-shelf flow over the outer shelf of the Ross Sea . Journal of Geophysical Research. vol.118:18631876, doi:10.1002/jgrc.20090 

Kohut, J., Roarty, H., Randall-Goodwin, E., Glenn, S., Lichtenwalner, S. C. 2013. Evaluation of two algorithms for a network of coastal HF radars in the Mid-Atlantic Bight . Ocean Dynamics, doi;10.1007/s10236-012-0533-9

Weis, J. S., Weis, P. 2013. Aggressive waves in the Lemon-clawed Fiddler crab (Uca perplexa): A regional 'dialect" in Fiji . ISRN Biodiversity.

Quan, T. M., Wright, J. D., Falkowski, P. G. 2013. Co-variation of nitrogen isotopes and redox states through glacial-interglacial cycles in the Black Sea . Geochimica et Cosmochimica Acta. 112: 16/j.gca.2013.02 .029 

Neubauer, P., Jensen, O. P., Hutchings, J. A., Braun, J. K. 2013. Reslilience and recovery of overexploited marine populations . Science. 10.1126/science.1230441

Schofield, O., Moline. M. A., Cahill, B., Frazer, T., Kahl, A., Oliver, M., Reinfelder, J., Glenn, S., Chant, R. 2013. Phytoplankton productivity in a turbid buoyant coastal plume . Continental Shelf Research.

Berelson, W. M., McManus, J., Severmann, S., and Reimers, C. E. 2013. Benthic flux of oxygen and nutrients across Oregon/California shelf sediments . Continental Shelf Research 55, 66-75.

Eckert, S., Brumsack, H.-J., Severmann, S., Schnetger, B., März, C., and Fröllje, H. 2013. Establishment of euxinic conditions in the Holocene Black Sea . Geology 41, 413-434.

Frada, M. J., Burrows, E. H., Wyman, K. D., Falkowski, P. G. 2013. Quantum requirements for growth and fatty acid biosynthesis in the marine diatom Phaeodactylum tricornutum (Bacillariophyceae) in nitrogen replete and limited conditions . Journal of Phycology 49: 381-388 DOI: 10.1111/jpy.12046

Munroe, D.M., Powell, E.N., Mann, R., Klinck, J.M. and Hofmann, E.E. 2013. Underestimation of primary productivity on continental shelves: evidence from maximum size of extant surfclam (Spisula solidissima) populations . Fisheries Oceanography, 22: 220–233. doi: 10.1111/fog.12016

Able, K. W., M. J. Wuenschel, T. M. Grothues, J. M. Vasslides, and P. M. Rowe.  2013.  Do surf zones in New Jersey provide "nursery" habitat for southern fishes?  Environmental Biology of Fishes 96:661-675.

Fuchs, H. L., E. J. Hunter, E. L. Schmitt and R. A. Guazzo 2013. Active downward propulsion by oyster larvae in turbulence . Journal of Experimental Biology 216: 1458-1469.

Sikes, E.L. 2013. How the ocean exhales. Nature 495, 454-455.

Panek, F. M., Weis, J. S. 2013. Diet of the Eastern Mudminnow (Umbra pygmaea DeKay) from two geographically distinct populations within the NorthAmerican native range. Northeastern Naturalist. 20(1): 37-48.

Able, K. W., Grothuses, T. M., Kemp, I. M. 2013. Fine-scale distribution of pelagic sishes relative to a large urban pier . Marine Ecology Progress Series. 476: 185-198. doi: 1-.3354/meps10151

MacDonald, J. A., Weis, J. S. 2013. Fish community features correlate with prop epibionts in Caribbean mangroves . Journal of Experimental Marine Biology and Ecology. 44: 90-98.

Dalyander, P. S., B. Butman, C. Sherwood, R. Signell, J. Wilkin 2013. Characterizing Wave- and Current-Induced Bottom Shear Stress: U.S. Middle Atlantic Continental Shelf , Continental Shelf Research, 52, 73-86, doi:10.1016/j.bbr.2011.1003.1031.

Drake, J., Mass, T., Haramaty, L., Zelzion, E., Bhattacharya, Falkowski, P. G. 2013. Proteomic analysis of skeletal organic matrix from the stony coral Stylophora pistillata . Proceedings of the National Academy of Sceinces.

Fertig, B., Kennish, M.J., Sakowicz, G.P. 2013. Changing eelgrass (Zostera marina L.) characteristics in a highly eutrophic temperate coastal lagoon. Aquatic Botany 104: 70-79

Fertig, B., O'Neil, J.M., Beckert, K.A., Cain, C.J., Needham, D.M., Carruthers, T.J.B., Dennison, W.C. 2013. Elucidating terrestrial nutrient sources to a coastal lagoon, Chincoteague Bay, Maryland, USA . Estuarine, Coastal and Shelf Science 116:1-10   

Oliver MJ ,Irwin A, Moline MA, Fraser W, Patterson D, Schofield O, Kohut J 2013 Adelie Penguin Foraging Location Predicted by Tidal Regime Switching PLoS ONE, Volume 8, Issue 1, e55163

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